Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABOA58_RS00565 Genome accession   NZ_CP158190
Coordinates   107047..108435 (+) Length   462 a.a.
NCBI ID   WP_350300866.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain LSJ146     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 102047..113435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABOA58_RS00545 (ABOA58_00545) - 102169..102630 (+) 462 WP_048677843.1 CtsR family transcriptional regulator -
  ABOA58_RS00550 (ABOA58_00550) - 102652..103203 (+) 552 WP_350300864.1 UvrB/UvrC motif-containing protein -
  ABOA58_RS00555 (ABOA58_00555) - 103200..104276 (+) 1077 WP_350300865.1 protein arginine kinase -
  ABOA58_RS00560 (ABOA58_00560) clpC 104407..106848 (+) 2442 WP_305161971.1 ATP-dependent protease ATP-binding subunit ClpC -
  ABOA58_RS00565 (ABOA58_00565) radA 107047..108435 (+) 1389 WP_350300866.1 DNA repair protein RadA Machinery gene
  ABOA58_RS00570 (ABOA58_00570) disA 108438..109511 (+) 1074 WP_063235780.1 DNA integrity scanning diadenylate cyclase DisA -
  ABOA58_RS00575 (ABOA58_00575) - 109739..110836 (+) 1098 WP_137016904.1 PIN/TRAM domain-containing protein -
  ABOA58_RS00580 (ABOA58_00580) ispD 110858..111547 (+) 690 WP_350300867.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ABOA58_RS00585 (ABOA58_00585) ispF 111562..112041 (+) 480 WP_283916485.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50223.90 Da        Isoelectric Point: 8.2429

>NTDB_id=1010211 ABOA58_RS00565 WP_350300866.1 107047..108435(+) (radA) [Peribacillus frigoritolerans strain LSJ146]
MAVKKKTKFMCQSCGYESAKWMGKCPGCGEWNKMVEETEIVKPARKGAFTHSEVRGSGEREKAAPITTIQSEKEPRIKTD
LMELNRALGGGIVQGSLVLIGGDPGIGKSTLLLQVSSQLAHKQKKVLYISGEESVKQTKLRADRLGTMSEHLFVYAETDM
DYIQQAITEVKPDLVIIDSIQTVYHSEVTSAPGSVSQVRECTASLMRIAKTNGIAIFIVGHVTKEGAIAGPRLLEHMVDT
VLYFEGERHHTYRIIRAVKNRFGSTNEMGIFEMKEHGLEEVANPSEIFLEERSQGASGSTVVASMEGTRPVLVEIQALIS
PTSFGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAISIASSFRDKPTNPADCIIGE
VGLTGEVRRVSRIEQRVQEAAKLGFERVIIPANNIGGWTAPKGIKIVGVSSVSEALKQTLGG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=1010211 ABOA58_RS00565 WP_350300866.1 107047..108435(+) (radA) [Peribacillus frigoritolerans strain LSJ146]
ATGGCTGTAAAAAAGAAAACAAAATTTATGTGTCAGTCTTGTGGATATGAGTCCGCGAAATGGATGGGGAAATGCCCAGG
CTGCGGTGAATGGAACAAAATGGTCGAGGAAACCGAAATTGTTAAACCTGCTAGAAAGGGCGCTTTTACCCATTCGGAGG
TTAGAGGTTCCGGGGAACGAGAGAAGGCAGCACCCATAACGACCATTCAATCAGAAAAAGAACCACGGATTAAGACGGAT
TTAATGGAATTGAATCGTGCTCTTGGGGGCGGGATCGTACAGGGGTCACTTGTATTGATCGGAGGGGACCCGGGTATCGG
TAAGTCCACCCTGCTTTTACAGGTATCATCCCAATTGGCGCATAAACAGAAAAAAGTGCTATATATATCAGGTGAAGAAT
CAGTCAAGCAGACCAAATTGAGAGCGGACCGGCTTGGGACCATGTCGGAACATCTATTCGTTTATGCTGAAACCGATATG
GACTATATCCAACAGGCCATTACAGAGGTAAAACCGGATTTGGTCATTATTGACTCCATTCAAACGGTATATCATTCGGA
GGTTACATCTGCCCCGGGAAGCGTTTCACAAGTGAGGGAATGCACAGCCTCACTCATGCGCATAGCTAAAACGAACGGGA
TCGCGATTTTTATCGTCGGTCACGTTACAAAGGAAGGGGCCATTGCAGGGCCGCGACTGCTTGAGCACATGGTTGACACC
GTTTTATATTTTGAAGGAGAAAGACACCATACATATCGAATTATACGCGCGGTCAAAAATCGCTTTGGTTCGACGAATGA
GATGGGTATTTTTGAAATGAAAGAACATGGATTGGAAGAGGTTGCGAATCCATCGGAAATTTTCCTTGAAGAACGGTCGC
AAGGAGCTTCGGGTTCCACGGTCGTCGCATCCATGGAGGGCACAAGGCCGGTGCTTGTCGAAATTCAAGCATTGATTTCA
CCTACGAGTTTTGGAAACCCAAGGCGAATGGCCACGGGAATTGACCACAATCGAGTTTCGCTTTTAATGGCTGTTCTGGA
AAAGAGAGTGGGCTTGCTGCTCCAAAACCAGGATGCGTATTTAAAGGTTGCTGGTGGGGTCAAGCTTGATGAACCGGCGA
TTGACCTCGCTGTCGCAATAAGCATTGCATCAAGCTTCCGTGATAAACCAACAAACCCTGCCGATTGCATCATTGGTGAA
GTGGGGCTGACTGGGGAAGTCAGAAGGGTGTCACGGATAGAACAAAGGGTGCAGGAAGCAGCGAAGTTAGGGTTTGAGCG
GGTTATCATACCGGCTAATAATATAGGGGGATGGACCGCCCCGAAAGGTATTAAGATCGTTGGTGTTTCATCGGTTTCGG
AGGCTCTTAAACAAACGTTAGGGGGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(369-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.174

99.567

0.768
  radA Streptococcus mitis NCTC 12261

61.707

98.918

0.61
  radA Streptococcus mitis SK321

61.488

98.918

0.608
  radA Streptococcus pneumoniae TIGR4

61.269

98.918

0.606
  radA Streptococcus pneumoniae D39

61.269

98.918

0.606
  radA Streptococcus pneumoniae Rx1

61.269

98.918

0.606
  radA Streptococcus pneumoniae R6

61.269

98.918

0.606

Multiple sequence alignment