Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   H1X08_RS05080 Genome accession   NZ_LR822025
Coordinates   993770..994840 (+) Length   356 a.a.
NCBI ID   WP_180482634.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_961     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 988770..999840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X08_RS05070 (STHERMO_1144) glgP 989977..992241 (+) 2265 WP_179972968.1 glycogen/starch/alpha-glucan family phosphorylase -
  H1X08_RS05075 (STHERMO_1145) - 992554..993543 (+) 990 WP_179974513.1 lipoate--protein ligase -
  H1X08_RS05080 (STHERMO_1147) xerS 993770..994840 (+) 1071 WP_180482634.1 tyrosine recombinase XerS Machinery gene
  H1X08_RS05085 (STHERMO_1148) - 995002..997542 (-) 2541 WP_180482635.1 M1 family metallopeptidase -
  H1X08_RS05090 (STHERMO_1149) phoU 997676..998329 (-) 654 WP_002950747.1 phosphate signaling complex protein PhoU -
  H1X08_RS05095 (STHERMO_1150) pstB 998357..999115 (-) 759 WP_180482636.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41563.75 Da        Isoelectric Point: 9.7411

>NTDB_id=1010182 H1X08_RS05080 WP_180482634.1 993770..994840(+) (xerS) [Streptococcus thermophilus isolate STH_CIRM_961]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFNWLIDTGISDADDITSVHIKTLENLTKKDME
SFVFYLRERPSLNTYSKKQGVSQITINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKISTKKKKETLAARAENIKQK
LFLGVETMKFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLSSGVRLSEAVNLDLKDINLKMMVIDVTRKGGQRDS
VNVASFARPYLENYLSIRNKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1010182 H1X08_RS05080 WP_180482634.1 993770..994840(+) (xerS) [Streptococcus thermophilus isolate STH_CIRM_961]
ATGAAACGTGAACTCTTACTAGAAAAAATTGAAGAATACAAATCTCTTATGCCTTGGTTTGTTTTGGAGTATTATCAATC
TAAACTATCTGTACCGTATTCTTTCACAACCTTATATGAATATCTCAAGGAATATAAACGCTTTTTTAACTGGTTAATTG
ACACAGGTATTTCAGATGCTGATGATATTACCTCAGTTCATATCAAAACCTTGGAGAATCTAACTAAAAAAGATATGGAA
TCTTTTGTCTTCTATCTACGTGAACGTCCATCTTTAAATACCTATTCAAAGAAACAGGGTGTCTCTCAAATAACCATTAA
TCGTACTCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGACCTGATGGTGAACCATATTTCT
ATCGTAATGTCATGAAAAAAATTTCGACTAAGAAAAAGAAAGAAACCTTGGCTGCACGTGCTGAGAATATCAAACAAAAA
CTTTTTCTAGGCGTTGAAACCATGAAGTTCCTTGATTATGTAGAAAATGAATACGAAGTCAAGCTCTCAAATCGTGCTAA
ATCTTCGTTTTATAAGAATAAAGAGCGTGATTTAGCTATCATTGCCCTACTGCTGTCTTCAGGCGTTCGACTCTCTGAGG
CTGTAAATCTGGACCTTAAAGATATCAATTTAAAAATGATGGTTATTGACGTTACTCGAAAAGGTGGTCAACGGGACTCG
GTTAATGTGGCAAGTTTTGCAAGACCCTATCTTGAAAACTATCTTAGCATACGTAATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCTCTATTTTTAACAGAATATCGAGGCGTTCCCAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGCTA
AGTATTCTCAGGATTTCAAGATTCGTGTCACTCCCCACAAATTACGTCATACTTTGGCAACACGTCTTTATGATGCTACT
AAGTCTCAAGTTTTAGTTAGTCATCAACTTGGTCATTCTTCCACTCAGGTCACTGATCTTTACACCCATATTGTAAATGA
TGAGCAAAAAAATGCTCTAGATAATTTATGA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(183-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

81.18

100

0.812