Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   H1X08_RS04135 Genome accession   NZ_LR822025
Coordinates   821470..823680 (+) Length   736 a.a.
NCBI ID   WP_179973329.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_961     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 816470..828680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X08_RS04115 (STHERMO_0924) hflX 817850..819088 (+) 1239 WP_179971989.1 GTPase HflX -
  H1X08_RS04120 (STHERMO_0925) - 819081..819728 (+) 648 WP_011681259.1 cystathionine beta-lyase -
  H1X08_RS04125 (STHERMO_0926) rnz 819760..820689 (+) 930 WP_179971988.1 ribonuclease Z -
  H1X08_RS04130 (STHERMO_0927) - 820689..821457 (+) 769 Protein_784 SDR family NAD(P)-dependent oxidoreductase -
  H1X08_RS04135 (STHERMO_0929) recJ 821470..823680 (+) 2211 WP_179973329.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  H1X08_RS04140 (STHERMO_0930) - 823797..824315 (+) 519 WP_179971985.1 adenine phosphoribosyltransferase -
  H1X08_RS04145 (STHERMO_0931) metA 824486..825430 (+) 945 WP_179971984.1 homoserine O-acetyltransferase MetA -
  H1X08_RS04150 (STHERMO_0932) - 825502..826200 (+) 699 WP_179971983.1 DnaD domain-containing protein -
  H1X08_RS04155 (STHERMO_0933) nth 826200..826844 (+) 645 WP_179971982.1 endonuclease III -
  H1X08_RS10660 (STHERMO_0934) - 827191..827742 (+) 552 WP_232086274.1 hypothetical protein -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 82719.26 Da        Isoelectric Point: 4.4637

>NTDB_id=1010174 H1X08_RS04135 WP_179973329.1 821470..823680(+) (recJ) [Streptococcus thermophilus isolate STH_CIRM_961]
MITSTYDWKINTKEPDAGFFKLAKEHGLAKTAAKIAYERGIRTEEALEGFLKADLSHLHDPYLLHDMDKVVARIRQAIEN
YEQILVYGDYDADGMTSASIIKEALEMMGAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIITVDNGVAGNEAIAYAQ
EQGVDVIVTDHHSMPSQLPEAYAIVHPEHPGADYPFKYLAGCGVAFKIATALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQKLLHISEVDLTTISEETVAFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKN
EERKDVVQNIFDEAMSMVDLDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINIFHALDD
HRDIFTAFGGHAGAAGMTLPEENLTQLSDILCSYVYDNDIDTSAKNTLNLDEELQLGELSLDTIRSLEKLAPFGMDNKKP
VFWLHDISVIQARTMGQNGAHLKFKVKQGKASFDVVAFNKGHLLQEFQQAQGLELAVTLSVNVWNGQKTLQLMLEDVRVD
DVQLFDFRSKNMVLPEGLPTVEEASDEATAVVLDTLPNSETELKEWFDGKEFQAIYFKNRIKKAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDDLSHYLKIDKILLIKMIQIFDELDFVTIDNGVMTVNKEAGKRDIEESKIFQDLKRLVKFQELMA
LGTPQEIYDWLYKQEQ

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=1010174 H1X08_RS04135 WP_179973329.1 821470..823680(+) (recJ) [Streptococcus thermophilus isolate STH_CIRM_961]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCTAAAGAACATGG
ACTGGCAAAAACAGCAGCCAAGATTGCCTATGAACGTGGCATTAGGACAGAAGAGGCACTTGAAGGCTTTCTAAAGGCAG
ATTTATCGCACCTTCATGATCCTTATCTGCTTCATGATATGGATAAGGTAGTGGCTAGAATCCGTCAGGCTATTGAAAAT
TATGAACAAATCTTAGTATATGGAGATTACGATGCGGATGGTATGACGTCAGCCTCTATTATCAAAGAAGCCCTTGAAAT
GATGGGAGCTGAAGCTCGAGTATACTTGCCAAACCGTTTTACAGATGGTTATGGACCAAACGAAAGTGTCTATAAGTATT
TCATTGAGCAGGAAGGTATTTCACTCATCATTACAGTGGATAATGGGGTAGCTGGGAATGAGGCTATTGCTTATGCGCAA
GAGCAAGGTGTGGATGTTATCGTCACAGACCACCATAGCATGCCGTCACAGCTTCCAGAAGCTTATGCCATTGTTCATCC
AGAACATCCAGGTGCTGATTATCCCTTTAAGTATTTGGCAGGTTGTGGAGTAGCTTTCAAAATAGCAACGGCCCTCCTCG
AGACCATACCAACAGAGATGTTGGATTTGGTAGCTATAGGGACTATTGCTGATATGGTTAGCCTGACCGATGAAAATCGT
ATTATGGTTAAGGTTGGACTTGAAATTCTCAAGACTACTGAGCGTATTGGGCTTCAAAAATTGCTCCATATTTCCGAAGT
AGACCTAACAACAATTTCTGAAGAAACAGTGGCTTTCAAACTAGCCCCTCAACTCAATGCCTTAGGACGTTTAGACGATC
CAAACCCAGCTATTGAACTATTAACCGGATTTGACGATGAGGAAGCGCAAGCTATTGCTCTGGAAATCAATGCCAAAAAT
GAAGAACGTAAGGATGTTGTTCAAAACATCTTTGATGAAGCCATGAGCATGGTAGACTTAGATAAACCAGTTCAGGTTTT
GGCTAAGGAAGGCTGGCATCCTGGTGTACTCGGCATTGTTGCTGGTCGTATCATGGAGCAAATCAGTCAGACAGTAGTGG
TTTTAAATATTGAAGATGGCTTGGCTAAGGGGTCAGCTCGTAGTTTGGAGTCTATCAATATCTTCCATGCACTTGATGAC
CACAGAGACATCTTTACTGCATTTGGAGGGCACGCTGGAGCAGCTGGTATGACCCTTCCAGAGGAAAATCTTACTCAACT
CTCAGATATTTTATGTAGTTATGTCTACGATAATGACATTGATACGAGTGCCAAAAATACGCTTAATTTAGACGAGGAGC
TACAACTCGGTGAGCTTAGCTTGGATACCATAAGGAGCCTCGAAAAACTAGCACCTTTTGGTATGGATAATAAAAAGCCA
GTCTTTTGGCTACATGATATTTCCGTTATTCAAGCTAGAACTATGGGGCAAAATGGAGCTCATCTTAAGTTCAAGGTTAA
GCAAGGCAAGGCTAGTTTTGATGTTGTCGCCTTTAACAAAGGGCATCTGCTTCAAGAATTTCAGCAAGCTCAGGGGTTGG
AATTAGCAGTGACATTGTCCGTTAATGTATGGAATGGCCAGAAAACACTACAGCTCATGTTGGAAGATGTGCGCGTGGAC
GATGTTCAGTTATTTGATTTTCGCTCAAAAAATATGGTACTACCTGAGGGCCTACCAACTGTAGAAGAGGCCTCAGACGA
AGCAACTGCAGTTGTCCTCGACACCCTACCGAATTCAGAGACGGAATTAAAAGAGTGGTTTGACGGTAAGGAATTCCAGG
CCATTTATTTTAAGAATCGCATTAAGAAAGCCTATTATCTGACAGGCTATGGAACTAGAGAGCAATTTGCAAGGCTCTAT
AAAACCATTTATCAATTCCCAGAATTTGATGTGCGCTATAAATTAGATGACCTCAGTCATTATCTTAAGATTGATAAAAT
TCTTCTCATCAAGATGATTCAAATTTTTGATGAATTGGACTTTGTCACTATTGATAATGGTGTCATGACAGTTAATAAAG
AGGCTGGAAAACGTGATATTGAGGAAAGCAAGATTTTCCAGGACCTTAAACGTCTTGTCAAGTTCCAAGAACTCATGGCT
TTGGGAACACCACAGGAAATTTATGATTGGCTCTACAAGCAGGAGCAGTAG

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

RecJ OB domain (RecJ_OB)

(451-556)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(582-731)

DHHA1 domain (DHHA1)

(317-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

66.351

100

0.667
  recJ Bacillus subtilis subsp. subtilis str. 168

37.037

100

0.394