Detailed information NTG1010160

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: ABNG17_RS19755
• Genome accession: NZ_CP158181
• Coordinates: 3710367..3711479 (+)
• Length: 370 a.a.
• NCBI ID: WP_003215341.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain RI06-95
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3705367..3716479

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABNG17_RS19730 (ABNG17_19715)	rnpA	3706119..3706478 (-)	360	WP_003214983.1	ribonuclease P protein component	-
ABNG17_RS19735 (ABNG17_19720)	rpmH	3706557..3706691 (-)	135	WP_008360908.1	50S ribosomal protein L34	-
ABNG17_RS19740 (ABNG17_19725)	dnaA	3707312..3708652 (+)	1341	WP_003214781.1	chromosomal replication initiator protein DnaA	-
ABNG17_RS19745 (ABNG17_19730)	dnaN	3708849..3709985 (+)	1137	WP_050944677.1	DNA polymerase III subunit beta	-
ABNG17_RS19750 (ABNG17_19735)	yaaA	3710135..3710350 (+)	216	WP_003215257.1	S4 domain-containing protein YaaA	-
ABNG17_RS19755 (ABNG17_19740)	recF	3710367..3711479 (+)	1113	WP_003215341.1	DNA replication/repair protein RecF	Machinery gene
ABNG17_RS19760 (ABNG17_19745)	-	3711497..3711742 (+)	246	WP_212046499.1	extracellular matrix/biofilm biosynthesis regulator RemA family protein	-
ABNG17_RS19765 (ABNG17_19750)	gyrB	3711800..3713716 (+)	1917	WP_034620352.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
ABNG17_RS19770 (ABNG17_19755)	gyrA	3713949..3716450 (+)	2502	WP_003214767.1	DNA gyrase subunit A	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42581.69 Da
• Isoelectric Point: 7.7384

>NTDB_id=1010160 ABNG17_RS19755 WP_003215341.1 3710367..3711479(+) (recF) [Bacillus pumilus strain RI06-95]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQKDQAMLEVLTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYHTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide

• Length: 1113 bp

>NTDB_id=1010160 ABNG17_RS19755 WP_003215341.1 3710367..3711479(+) (recF) [Bacillus pumilus strain RI06-95]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAACAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCGCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCAATGCAGCTAGTGATCTCAAAAAAAGGGAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGGGCGTTAAACACCATCATGTTTGCACCAGAGGACTTAAGTCTTGTGAAGGGCAGCCCGCAAATCCGCAGAAGAT
TTCTCGATATGGAGATTGGACAAGTTTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATTCTCTCTCAGCGG
AATCATTACTTGAAACAATTGCAGACAAGAAAGCAAAAGGATCAAGCGATGCTGGAGGTTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAAGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAGAAATGGGCGCAGCCGTTGCATTTTGGCA
TTTCTAGAGAGCTAGAAACACTCACGCTCCAATACCACACGGCGATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGAGTGACGCTGTGGGGACCTCACAG
AGATGACCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATCGACTTGATACACGAAGAGATTGGAGAATATCCCATTCTTCTACTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATCGATCACGCCACCTTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	83.74	99.73	0.835