Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ABNG17_RS11220 Genome accession   NZ_CP158181
Coordinates   2114038..2114841 (-) Length   267 a.a.
NCBI ID   WP_003215740.1    Uniprot ID   A0AB34QSQ5
Organism   Bacillus pumilus strain RI06-95     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2109038..2119841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNG17_RS11200 (ABNG17_11200) - 2111247..2111483 (+) 237 WP_050943781.1 DUF2627 domain-containing protein -
  ABNG17_RS11205 (ABNG17_11205) - 2111518..2112255 (-) 738 WP_335349900.1 glycerophosphodiester phosphodiesterase -
  ABNG17_RS11210 (ABNG17_11210) - 2112481..2113581 (-) 1101 WP_003215741.1 Rap family tetratricopeptide repeat protein -
  ABNG17_RS11215 (ABNG17_11215) - 2113569..2113766 (-) 198 WP_034661994.1 hypothetical protein -
  ABNG17_RS11220 (ABNG17_11220) spo0A 2114038..2114841 (-) 804 WP_003215740.1 sporulation transcription factor Spo0A Regulator
  ABNG17_RS11225 (ABNG17_11225) spoIVB 2115127..2116404 (-) 1278 WP_350303409.1 SpoIVB peptidase -
  ABNG17_RS11230 (ABNG17_11230) recN 2116603..2118339 (-) 1737 WP_284906997.1 DNA repair protein RecN Machinery gene
  ABNG17_RS11235 (ABNG17_11235) argR 2118373..2118822 (-) 450 WP_003215836.1 transcriptional regulator ArgR -
  ABNG17_RS11240 (ABNG17_11240) - 2118982..2119836 (-) 855 WP_350303410.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29946.45 Da        Isoelectric Point: 6.3914

>NTDB_id=1010131 ABNG17_RS11220 WP_003215740.1 2114038..2114841(-) (spo0A) [Bacillus pumilus strain RI06-95]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNDMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRRNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1010131 ABNG17_RS11220 WP_003215740.1 2114038..2114841(-) (spo0A) [Bacillus pumilus strain RI06-95]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGTCTAACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGACGGTCTTGCTGTACTGGAACGCCTCCGTGAAAACAATGACATGACCAAACAG
CCAAGTGTGATTATGCTAACGGCGTTTGGACAAGAAGATGTCACGAAAAAAGCAGTTGATCTAGGCGCATCTTATTTCAT
CTTAAAGCCATTTGATATGGAAAACCTAGTCGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTCACCCATCGAT
CTTCATCTATCCAAAACAGTGTCCTTCGAAACAAACCTGAACCGAAACGCAGAAACTTAGATGCGAGCATTACAACGATT
ATTCATGAGATTGGCGTCCCGGCTCATATTAAAGGTTACTTATACTTAAGAGAAGCCATTTCGATGGTGTACAATGACAT
CGAGCTTCTCGGAAGCATCACAAAAGTGTTGTATCCAGACATCGCGAAGAAATTTAACACGACCGCGAGCAGAGTAGAAC
GAGCGATTCGTCATGCGATTGAAGTGGCTTGGAGCAGAGGAAACATTGATTCCATTTCCTCACTCTTTGGTTATACAGTC
AGCATGTCTAAAGCAAAACCAACCAATTCTGAATTTATCGCAATGGTGGCTGATCGTCTGCGCTTAGAGCATAGAGCAAG
CTAG

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.06

100

0.884

Multiple sequence alignment