Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ABNG17_RS07985 Genome accession   NZ_CP158181
Coordinates   1482321..1483223 (+) Length   300 a.a.
NCBI ID   WP_050945050.1    Uniprot ID   -
Organism   Bacillus pumilus strain RI06-95     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1477321..1488223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNG17_RS07965 (ABNG17_07965) - 1477987..1479723 (+) 1737 WP_253622621.1 glycosyltransferase -
  ABNG17_RS07970 (ABNG17_07970) - 1479720..1479995 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  ABNG17_RS07975 (ABNG17_07975) sucC 1480172..1481332 (+) 1161 WP_003211841.1 ADP-forming succinate--CoA ligase subunit beta -
  ABNG17_RS07980 (ABNG17_07980) sucD 1481355..1482257 (+) 903 WP_003212080.1 succinate--CoA ligase subunit alpha -
  ABNG17_RS07985 (ABNG17_07985) dprA 1482321..1483223 (+) 903 WP_050945050.1 DNA-processing protein DprA Machinery gene
  ABNG17_RS07990 (ABNG17_07990) topA 1483417..1485492 (+) 2076 WP_003212237.1 type I DNA topoisomerase -
  ABNG17_RS07995 (ABNG17_07995) trmFO 1485563..1486867 (+) 1305 WP_003212444.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ABNG17_RS08000 (ABNG17_08000) xerC 1486930..1487847 (+) 918 WP_003211704.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34106.43 Da        Isoelectric Point: 8.5961

>NTDB_id=1010125 ABNG17_RS07985 WP_050945050.1 1482321..1483223(+) (dprA) [Bacillus pumilus strain RI06-95]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQTIDFTRLKQAEEKEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKHIYDPPPVLFLKGNISYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKEEWTIVSGLAKGIDGLAH
KECIRNKGKTIGIIAGGFQHLYPKEHVQMAEYMGEHHLLLSEHPPYVKPEKWHFPLRNRLISALTSGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=1010125 ABNG17_RS07985 WP_050945050.1 1482321..1483223(+) (dprA) [Bacillus pumilus strain RI06-95]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAACAATCGACTTTACCC
GCTTAAAACAAGCCGAAGAAAAAGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAACATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CATATCGTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGCACACGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTAAAGGAAGAGTGGACGATTGTCAGTGGCTTAGCAAAAGGCATTGATGGACTTGCACAT
AAAGAGTGCATTAGGAATAAAGGGAAAACGATCGGTATTATAGCAGGCGGATTTCAGCACTTATACCCAAAGGAACATGT
GCAAATGGCTGAATACATGGGCGAGCATCATTTGCTTTTATCTGAGCATCCGCCTTACGTCAAACCAGAAAAGTGGCATT
TTCCTTTGAGGAATCGTTTAATTAGTGCGCTCACAAGTGGAACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCACTC
ATTACCGCCTATCAAGCACTTGAGCAAGGCAAAGAGGTATTTGCGGTTGCAGGATCAATCTTTGATCCTAATTCCACAGG
TCCAGCCAGACTTATACAGCAGGGAGCAAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Lactococcus lactis subsp. cremoris KW2

39.236

96

0.377

Multiple sequence alignment