Detailed information NTG1010113

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: H0513_RS08945
• Genome accession: NZ_LR822023
• Coordinates: 1715757..1718261 (+)
• Length: 834 a.a.
• NCBI ID: WP_179972286.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_368
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1710757..1723261

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0513_RS08925 (STHERMO_2032)	-	1712993..1713535 (-)	543	WP_100273142.1	CvpA family protein	-
H0513_RS08930 (STHERMO_2033)	-	1713532..1713849 (-)	318	WP_003096030.1	hypothetical protein	-
H0513_RS08935 (STHERMO_2034)	rnhC	1714163..1715053 (+)	891	WP_179972284.1	ribonuclease HIII	-
H0513_RS08940 (STHERMO_2035)	lepB	1715072..1715695 (+)	624	WP_179972285.1	signal peptidase I	-
H0513_RS08945 (STHERMO_2036)	recD/recD2/recDB	1715757..1718261 (+)	2505	WP_179972286.1	ATP-dependent RecD-like DNA helicase	Machinery gene
H0513_RS08950 (STHERMO_2037)	-	1718317..1718643 (-)	327	WP_179973035.1	AzlD domain-containing protein	-
H0513_RS08955 (STHERMO_2038)	-	1718630..1719328 (-)	699	WP_415669290.1	AzlC family ABC transporter permease	-
H0513_RS08960 (STHERMO_2039)	tsaD	1719374..1720387 (-)	1014	WP_179972287.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
H0513_RS08965 (STHERMO_2040)	rimI	1720387..1720800 (-)	414	WP_014621963.1	ribosomal protein S18-alanine N-acetyltransferase	-
H0513_RS08970 (STHERMO_2041)	tsaB	1720802..1721488 (-)	687	WP_179972288.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
H0513_RS08975 (STHERMO_2042)	-	1721751..1721981 (+)	231	WP_002947111.1	DNA-dependent RNA polymerase subunit epsilon	-

Sequence

Protein

• Length: 834 a.a.
• Molecular weight: 94286.72 Da
• Isoelectric Point: 4.5917

>NTDB_id=1010113 H0513_RS08945 WP_179972286.1 1715757..1718261(+) (recD/recD2/recDB) [Streptococcus thermophilus isolate STH_CIRM_368]
MQEFYFSGTIERIIFENTSNFFRILLLEIDETDSDFEDYEIIVTGTMGDVMEGGDYTFWGQLTNHPKYGKQLQMTRYERS
KPSASGLIKYFSSDNFKGIGKKTAERIVEIYGEDPIDKILEDPSKLEQIPNLSKVNREAFLAKLKMNYGTEQILSKLSSY
GLTPKAASQIFNQYKEESLNLIEKYPYLLVEEVQGIGFKMADQLAERLGIASDAPERLRAALINCLLETSMEEGDTYIEA
KSLLERTIILLESSRQIELDPALVAHQLTHLIQEDKVQNIETRIFDNTLYFAEQGIYTHLTRIIKDQPDISAEDKIQASL
ERVEEELDITYDKVQKDAIIKALQSKVFILTGGPGTGKTTVINGIIKTYADLHGLDLKKSDLPIILAAPTGRAARRMNEL
TKLPSATIHRHLGLNGEDDFKTLDDYLDCDLIIIDEFSMVDTWLANQLFESISDTTQVIIVGDQDQLPSVGPGQVLADLL
QIDDLPKVSLTKIFRQSEDSTIVTLASQMRQGQLPTDFTEKKADRSYFEANANHIPQMIPKIVSAAIKSGIAAQDVQILA
PMYRGQAGINNLNTIMQDLLNPKEKANQFAFNDIFFRKNDKILHLVNDTELNVFNGDIGIITDLIPGKYTESKQDEIYMS
FDGNEVIYPRNEWNKITLAYAMSIHKSQGSEFPVVILPITRQSGRMLQRNLIYTAITRAKSKLVMLGEIAAFDYAVHNEG
AKRNTYLIQRFEQTYTQVVDKSVEKNVKNEGTDASNQTERKNSSPSETIENKDFSENINPSQTLINTYSHPVDKSVNKPV
QTEENYRLTEENWATIDPMIGLSEDDIAAFFNNN

Nucleotide

• Length: 2505 bp

>NTDB_id=1010113 H0513_RS08945 WP_179972286.1 1715757..1718261(+) (recD/recD2/recDB) [Streptococcus thermophilus isolate STH_CIRM_368]
ATGCAAGAATTTTATTTTTCAGGAACTATCGAGCGCATCATTTTTGAAAATACCAGTAATTTTTTTCGTATCCTACTCTT
AGAAATTGATGAAACTGACAGTGATTTTGAAGACTATGAAATCATTGTTACTGGAACTATGGGGGATGTCATGGAGGGGG
GAGACTACACCTTCTGGGGTCAGCTAACCAATCACCCCAAATATGGCAAACAACTCCAAATGACTCGCTACGAGCGTTCA
AAACCCTCAGCCAGTGGCCTTATCAAATATTTCTCCAGTGATAATTTCAAAGGAATCGGTAAGAAAACGGCCGAGCGTAT
TGTCGAGATTTATGGCGAAGACCCTATTGACAAGATTCTCGAAGACCCTAGTAAATTAGAGCAGATTCCTAATCTGTCCA
AGGTAAACCGAGAGGCCTTCCTTGCAAAATTAAAAATGAACTATGGTACTGAACAAATCTTGTCCAAACTTTCCAGCTAT
GGCCTCACACCAAAGGCTGCCTCACAAATTTTCAACCAATATAAGGAAGAATCACTTAACCTTATTGAAAAATATCCTTA
TCTCTTGGTAGAGGAAGTCCAGGGAATTGGATTTAAAATGGCCGATCAACTAGCCGAACGCCTAGGGATTGCTAGCGATG
CTCCTGAGCGTTTACGAGCCGCCCTAATTAACTGTCTGCTAGAAACTAGTATGGAAGAAGGGGACACCTACATCGAAGCC
AAGTCCTTGCTTGAACGGACTATCATTCTTTTGGAAAGTTCTCGCCAGATTGAACTTGACCCTGCCTTGGTTGCTCACCA
ATTAACCCACCTCATCCAAGAGGATAAGGTGCAAAATATAGAGACTAGAATTTTTGATAATACCCTATATTTTGCAGAAC
AGGGCATCTATACCCACCTAACTCGTATCATAAAAGACCAGCCTGACATCAGTGCTGAGGACAAAATCCAAGCAAGTCTT
GAAAGGGTGGAAGAGGAGCTTGATATCACCTATGATAAGGTTCAAAAAGATGCCATTATTAAAGCCCTACAAAGCAAGGT
CTTCATCCTGACAGGTGGTCCCGGAACAGGGAAAACCACTGTTATTAACGGAATTATTAAAACCTATGCTGACCTTCATG
GTTTAGACCTCAAAAAGTCTGATTTACCCATTATTTTAGCAGCACCAACGGGACGGGCTGCTCGTCGGATGAACGAACTG
ACCAAGCTCCCTAGTGCCACTATCCATAGACATTTGGGGCTTAATGGCGAGGACGATTTCAAGACCTTAGATGACTATCT
CGATTGCGATTTGATTATCATCGATGAGTTCTCTATGGTTGATACTTGGTTGGCCAATCAACTCTTCGAAAGCATTTCCG
ATACCACTCAAGTAATCATTGTAGGTGACCAAGATCAGCTACCTTCTGTAGGCCCTGGCCAAGTCTTAGCTGACCTTTTG
CAGATTGATGACTTGCCTAAGGTTTCCCTAACCAAAATTTTCAGACAATCTGAGGATTCCACTATTGTTACCTTAGCTAG
CCAGATGCGCCAAGGCCAACTACCCACTGATTTCACAGAGAAAAAAGCTGACCGATCATACTTTGAGGCTAATGCTAACC
ATATTCCACAGATGATCCCTAAAATTGTCTCTGCCGCTATTAAAAGTGGGATCGCTGCTCAGGATGTACAGATTCTGGCC
CCCATGTACCGGGGACAGGCTGGTATCAACAATCTCAATACCATTATGCAGGATCTACTTAATCCCAAAGAAAAAGCCAA
TCAATTTGCCTTTAATGATATTTTCTTCCGTAAGAATGACAAGATTCTCCACCTGGTCAACGATACAGAACTCAATGTCT
TCAATGGCGATATTGGAATCATTACTGATCTCATACCTGGTAAATATACTGAAAGTAAGCAAGACGAAATTTACATGTCC
TTCGATGGCAATGAGGTTATCTATCCTCGTAACGAATGGAATAAGATTACTCTGGCCTATGCCATGTCTATACACAAATC
CCAAGGGAGTGAATTCCCAGTCGTTATCCTTCCCATCACACGCCAAAGTGGGCGTATGCTGCAACGTAACCTCATCTACA
CCGCTATCACACGCGCCAAAAGTAAACTGGTCATGTTGGGGGAAATCGCAGCCTTCGATTATGCCGTTCACAACGAGGGG
GCCAAACGTAATACCTACCTCATCCAACGTTTTGAACAAACTTATACACAAGTTGTTGATAAGTCTGTCGAAAAGAATGT
TAAAAACGAGGGAACAGACGCATCCAATCAAACAGAAAGGAAAAATAGTAGCCCCTCAGAAACCATTGAAAACAAAGACT
TCTCAGAAAATATCAATCCATCCCAAACTCTTATTAACACTTATTCACATCCTGTGGATAAGTCTGTTAACAAACCTGTG
CAAACAGAAGAAAACTATCGTTTAACTGAAGAAAATTGGGCAACTATCGATCCAATGATAGGTCTCAGCGAAGACGATAT
TGCAGCCTTTTTTAACAATAACTAA

Domains

Predicted by InterProScan.

• AAA domain (AAA_30) (331-524)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (659-705)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (572-638)

• Helix-hairpin-helix containing domain (HHH_RecD2) (147-237)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	45.114	89.568	0.404