Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   H0513_RS08685 Genome accession   NZ_LR822023
Coordinates   1663153..1666473 (-) Length   1106 a.a.
NCBI ID   WP_179972261.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_368     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1658153..1671473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0513_RS08675 (STHERMO_1970) - 1658385..1659116 (+) 732 WP_179972259.1 DUF554 domain-containing protein -
  H0513_RS08680 (STHERMO_1971) rexA 1659510..1663163 (-) 3654 WP_179972260.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  H0513_RS08685 (STHERMO_1972) rexB 1663153..1666473 (-) 3321 WP_179972261.1 ATP-dependent nuclease subunit B Machinery gene
  H0513_RS11195 (STHERMO_1973) - 1666965..1667614 (-) 650 Protein_1648 hypothetical protein -
  H0513_RS08695 - 1667621..1668086 (-) 466 Protein_1649 LytTR family DNA-binding domain-containing protein -
  H0513_RS11200 (STHERMO_1976) - 1668301..1668537 (-) 237 WP_226003588.1 hypothetical protein -
  H0513_RS11205 (STHERMO_1977) - 1668518..1668865 (-) 348 WP_232086246.1 hypothetical protein -
  H0513_RS08705 (STHERMO_1979) - 1669205..1669345 (-) 141 WP_179972262.1 hypothetical protein -
  H0513_RS08710 (STHERMO_1980) - 1669390..1670412 (-) 1023 Protein_1653 DUF6574 domain-containing protein -

Sequence

Protein


Download         Length: 1106 a.a.        Molecular weight: 126698.71 Da        Isoelectric Point: 5.2381

>NTDB_id=1010107 H0513_RS08685 WP_179972261.1 1663153..1666473(-) (rexB) [Streptococcus thermophilus isolate STH_CIRM_368]
MKLLYTDMSQDLTEILTEQASSYAQKGKRVFYIAPSALSFEKERKVLEYLPQSASFDITVTRFTQMARYFILNTSNPKTQ
LDDTGLAMIFYKVLLHMGDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQVEKQEDLVRIFSAAQDLLLA
GDFDNQSKLSAFFKEITSGHLDEALSNTVLVIDGFTRFSAEEEALVALLNDKCHQIVVGTYASQKAYKANFVYGNVYQAS
VDFLRTLAQTYKVIPDYVTTDKEGNLSFARISRLLESRHDFSTVDETVIEQDKHALKIWEVVNQKEEVAQVAKSIRQLLA
DGKRYKDILVLLGDEESYKLHVGQIFRKFDIPYYFGKEESMSSHPLVQFVDSLERIKRYNYRAEDLLNLVKSGLYGGFAQ
EGLDIFEYYVNFADIKGRHKFLSNFTANSRDKYNLDQINVLRSQLIEPLDKFLNSRKQKGSSLLKKLVIFLEAVQLPRQM
VELSTKASEAEKEQNEQVWKAFTHILEQVETIFGDESLSVDDFLSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAP
YVFALGMTQSHFPKVGQNKSLLSDEERSRINEATDEHRSLDIVTQSNSKRGHFMAMSLLNAASEQLVLSQPQIINESQDD
MSVYLKELLDLGIPLVEKGRNRFEAKGDQIGNYRDLLSTVIALNSSHLDLDLDKETKTFWSVAVRYLRKRLDKDQVLIPK
VIDDVTTTKVDDQVMQLVFPKEEPLKLSATALTTFYNNQYLYFLRYVLELEELESIHPDARHHGTYLHRVFERVMGDSSS
ESFDDKLEKAIAQTNQDHPFEILYTEDQESRFSLQILEDIARSTASVLRDNAAVKVEREEVKFDLLLENSIKITGIIDRV
DRLTDGALGVVDYKTGKNVFDIQKFYNGLSPQLVTYLEALRQTYKVDADQLFGAMYLHMQVPQLNLAQIGLEKLAAQAHK
ELTYKGLFVASETEHLTGGNYDLQKTVTYDKENLETLLEYNIKLFRSAAEVIRSGNFAINPYTEDGKSVQGDQIKSITHF
EADRHMGQARKLLRLPKKGKKEAYLELMAKTEEENQMQVSENPISFSVIDHAVRVDKKDQEDNHVD

Nucleotide


Download         Length: 3321 bp        

>NTDB_id=1010107 H0513_RS08685 WP_179972261.1 1663153..1666473(-) (rexB) [Streptococcus thermophilus isolate STH_CIRM_368]
ATGAAATTACTTTATACGGATATGTCTCAGGATTTAACAGAAATTCTGACGGAGCAGGCGTCTAGCTATGCTCAAAAGGG
AAAGAGGGTTTTTTATATTGCTCCTAGTGCCCTATCCTTTGAAAAGGAGCGAAAGGTTTTAGAATACCTGCCTCAGTCAG
CATCTTTTGACATTACGGTGACTCGTTTTACTCAGATGGCTAGGTATTTTATTCTCAATACGAGTAACCCAAAGACTCAG
TTGGATGATACAGGTTTGGCCATGATTTTTTATAAAGTGTTGTTGCACATGGGCGATGATGAGCTCAAGGTCTATGGCCG
TTTGCGTAAGGATAGCAACTTTATTAATCAATTGGTGGACCTTTATAAAGAGTTGCAGCAGGCCAATATGACAGTATTGG
ATTTGCAGCATTTGGATCAGGTTGAAAAACAAGAGGATTTGGTAAGGATTTTCAGTGCAGCTCAGGACCTCTTGTTGGCA
GGAGATTTTGACAATCAATCAAAGCTCAGTGCCTTCTTTAAGGAAATCACCTCAGGGCATCTGGATGAGGCCTTGAGTAA
CACAGTTTTGGTCATTGATGGTTTTACCCGTTTCTCGGCTGAGGAGGAGGCTCTGGTTGCACTCTTGAACGACAAGTGCC
ACCAGATTGTAGTTGGGACCTATGCTAGTCAAAAAGCTTATAAGGCCAATTTTGTTTATGGCAATGTTTATCAGGCCTCA
GTGGACTTCTTGAGGACTTTGGCTCAGACATATAAAGTGATACCCGACTACGTGACGACAGACAAGGAGGGCAATCTTTC
TTTTGCGCGTATTAGTCGTCTTTTGGAGAGCCGTCATGACTTTAGTACGGTAGATGAGACGGTAATTGAGCAGGATAAGC
ATGCCCTGAAGATTTGGGAAGTGGTCAACCAGAAAGAAGAAGTGGCCCAGGTTGCCAAGAGTATTCGTCAGTTGCTGGCA
GATGGCAAGCGTTACAAGGATATTTTGGTCTTGCTTGGTGACGAGGAGAGTTACAAGCTTCACGTGGGGCAGATTTTCCG
AAAATTTGATATTCCCTATTATTTCGGCAAGGAAGAAAGCATGTCTAGCCATCCTTTGGTGCAGTTTGTGGATTCGCTAG
AGCGTATCAAGCGCTATAACTACCGTGCTGAGGATTTGCTTAACCTTGTAAAATCCGGTCTCTATGGTGGTTTTGCTCAA
GAGGGTTTAGACATTTTTGAGTATTATGTCAATTTTGCGGATATCAAGGGGCGTCATAAATTCTTGTCTAATTTTACAGC
TAATAGTCGTGATAAGTATAATTTAGACCAGATCAATGTCTTGCGGTCACAATTGATAGAGCCCTTGGATAAGTTTCTTA
ATAGTCGCAAACAAAAGGGATCTAGTCTACTCAAGAAACTGGTGATCTTTTTAGAGGCTGTGCAACTGCCAAGGCAGATG
GTTGAATTGTCCACCAAGGCCAGTGAAGCTGAAAAAGAACAGAATGAACAGGTTTGGAAGGCTTTCACTCATATCTTGGA
GCAGGTTGAGACTATCTTTGGAGACGAATCGCTCTCAGTAGACGACTTTTTGTCTATCTTGCGTTCGGGAATGTTGGCCT
GTGATTACCGTACGGTTCCAGCCACTGTTGATGTGGTCAATGTGAAAAAATACGACTTAATACAGCCACATTCGGCTCCG
TATGTTTTTGCCTTGGGGATGACCCAGTCACATTTTCCTAAGGTAGGACAAAATAAGAGTCTCCTGTCTGATGAGGAGCG
TAGTCGTATCAATGAGGCGACGGATGAGCACAGGAGTTTGGATATTGTTACGCAGAGCAATAGTAAGCGAGGTCATTTCA
TGGCTATGTCGCTTTTGAATGCTGCTAGTGAACAATTAGTGCTTAGTCAGCCACAAATTATAAATGAAAGTCAAGATGAC
ATGTCGGTTTATTTGAAGGAGCTTCTTGACCTTGGTATTCCTTTGGTGGAAAAGGGACGCAATCGTTTCGAAGCAAAGGG
GGACCAGATTGGGAACTATAGAGACCTTCTGTCGACTGTCATTGCCCTTAACAGTAGCCATTTGGATCTTGACTTGGACA
AAGAAACCAAGACTTTCTGGTCGGTTGCTGTACGTTATCTCCGTAAGCGACTTGATAAGGATCAAGTCTTGATTCCAAAG
GTGATTGACGATGTGACGACAACCAAGGTGGACGATCAGGTCATGCAGTTGGTCTTTCCGAAGGAAGAACCACTGAAATT
ATCAGCTACAGCTCTGACGACCTTCTATAACAACCAATATCTTTATTTCTTGCGTTATGTTTTGGAACTTGAGGAGCTAG
AGTCTATCCATCCGGATGCTCGACACCATGGGACTTATTTACACCGAGTCTTTGAGCGTGTGATGGGTGATTCGTCGTCA
GAAAGCTTCGATGATAAATTGGAAAAGGCCATTGCTCAGACCAATCAGGATCACCCTTTTGAAATTCTCTATACTGAGGA
CCAAGAGAGTCGTTTCTCACTTCAGATTTTGGAGGACATAGCGCGTTCAACAGCCAGTGTTCTACGTGACAATGCGGCGG
TTAAGGTTGAGCGTGAGGAAGTCAAGTTTGACTTGCTTTTAGAAAATAGCATCAAGATTACTGGGATTATTGACCGAGTG
GACCGTTTAACAGATGGTGCTCTGGGTGTTGTTGACTATAAAACAGGTAAAAATGTCTTTGATATTCAGAAATTCTACAA
TGGCCTCAGTCCGCAATTGGTGACCTACCTGGAGGCTCTCCGTCAAACCTATAAGGTTGATGCTGATCAACTTTTTGGGG
CTATGTATCTTCACATGCAGGTCCCACAGCTTAACCTAGCTCAGATTGGTTTGGAAAAGCTAGCGGCTCAGGCTCATAAG
GAATTGACTTATAAGGGACTTTTTGTGGCTTCAGAAACGGAGCATTTGACTGGTGGAAACTATGATCTGCAAAAGACTGT
CACCTATGACAAGGAGAATTTAGAAACCTTGTTGGAATACAATATTAAGCTCTTTAGGAGTGCTGCTGAAGTTATTCGAA
GTGGGAATTTTGCGATCAATCCTTATACTGAGGATGGCAAGTCTGTTCAAGGGGATCAAATCAAGTCTATTACTCACTTC
GAGGCCGACCGCCACATGGGACAGGCTCGTAAACTCTTGCGTTTACCCAAAAAGGGCAAGAAGGAAGCCTATTTGGAGTT
GATGGCAAAAACTGAGGAAGAGAATCAGATGCAAGTTTCTGAAAATCCTATCTCCTTTTCAGTCATTGATCATGCTGTGA
GAGTAGACAAAAAAGACCAGGAGGATAACCATGTTGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

43.29

98.373

0.426

Multiple sequence alignment