Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   H0513_RS06255 Genome accession   NZ_LR822023
Coordinates   1168389..1170599 (-) Length   736 a.a.
NCBI ID   WP_179971986.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_368     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1163389..1175599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0513_RS11075 (STHERMO_1389) - 1164328..1164879 (-) 552 WP_232086274.1 hypothetical protein -
  H0513_RS06235 (STHERMO_1390) nth 1165226..1165870 (-) 645 WP_179971982.1 endonuclease III -
  H0513_RS06240 (STHERMO_1391) - 1165870..1166568 (-) 699 WP_179971983.1 DnaD domain-containing protein -
  H0513_RS06245 (STHERMO_1392) metA 1166640..1167584 (-) 945 WP_179971984.1 homoserine O-acetyltransferase MetA -
  H0513_RS06250 (STHERMO_1393) - 1167755..1168273 (-) 519 WP_179971985.1 adenine phosphoribosyltransferase -
  H0513_RS06255 (STHERMO_1394) recJ 1168389..1170599 (-) 2211 WP_179971986.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  H0513_RS06260 (STHERMO_1395) - 1170612..1171379 (-) 768 WP_179971987.1 SDR family NAD(P)-dependent oxidoreductase -
  H0513_RS06265 (STHERMO_1396) rnz 1171379..1172308 (-) 930 WP_179971988.1 ribonuclease Z -
  H0513_RS06270 (STHERMO_1397) - 1172340..1172987 (-) 648 WP_011681259.1 cystathionine beta-lyase -
  H0513_RS06275 (STHERMO_1398) hflX 1172980..1174218 (-) 1239 WP_179971989.1 GTPase HflX -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 82693.22 Da        Isoelectric Point: 4.4637

>NTDB_id=1010079 H0513_RS06255 WP_179971986.1 1168389..1170599(-) (recJ) [Streptococcus thermophilus isolate STH_CIRM_368]
MITSTYDWKINTKEPDAGFFKLAKEHGLAKTAAKIAYERGIRTEEALEGFLKADLSHLHDPYLLHDMDKVVARIRQAIEN
YEQILVYGDYDADGMTSASIIKEALEMMGAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIITVDNGVAGNEAIAYAQ
EQGVDVIVTDHHSMASQLPEAYAIVHPEHPGADYPFKYLAGCGVAFKIATALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQKLLHISEVDLTTISEETVAFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKN
EERKDVVQNIFDEAMSMVDLDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINIFHALDD
HRDIFTAFGGHAGAAGMTLPEENLTQLSDILCSYVYDNDIDTSAKNTLNLDEELQLGELSLDTIRSLEKLAPFGMDNKKP
VFWLHDISVIQARTMGQNGAHLKFKVKQGKASFDVVAFNKGHLLQEFQQAQGLELAVTLSVNVWNGQKTLQLMLEDVRVD
DVQLFDFRSKNMVLPEGLPTVEEASDEATAVVLDTLPNSETELKEWFDGKEFQAIYFKNRIKKAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDDLSHYLKIDKILLIKMIQIFDELDFVTIDNGVMTVNKEAGKRDIEESKIFQDLKRLVKFQELMA
LGTPQEIYDWLYKQEQ

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=1010079 H0513_RS06255 WP_179971986.1 1168389..1170599(-) (recJ) [Streptococcus thermophilus isolate STH_CIRM_368]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCTAAAGAACATGG
ACTGGCAAAAACAGCAGCCAAGATTGCCTATGAACGTGGCATTAGGACAGAAGAGGCACTTGAAGGCTTTCTAAAGGCAG
ATTTATCGCACCTTCATGATCCTTATCTGCTTCATGATATGGATAAGGTAGTGGCTAGAATCCGTCAGGCTATTGAAAAT
TATGAACAAATCTTAGTATATGGAGATTACGATGCGGATGGTATGACGTCAGCCTCTATTATCAAAGAAGCCCTTGAAAT
GATGGGAGCTGAAGCTCGAGTATACTTGCCAAACCGTTTTACAGATGGTTATGGACCAAACGAAAGTGTCTATAAGTATT
TCATTGAGCAGGAAGGTATTTCACTCATCATTACAGTGGATAATGGGGTAGCTGGGAATGAGGCTATTGCTTATGCGCAA
GAGCAAGGTGTGGATGTTATCGTCACAGACCACCATAGCATGGCGTCACAGCTTCCAGAAGCTTATGCCATTGTTCATCC
AGAACATCCAGGTGCTGATTATCCCTTTAAGTATTTGGCAGGTTGTGGAGTAGCTTTCAAAATAGCAACGGCCCTCCTCG
AGACCATACCAACAGAGATGTTGGATTTGGTAGCTATAGGGACTATTGCTGATATGGTTAGCCTGACCGATGAAAATCGT
ATTATGGTTAAGGTTGGACTTGAAATTCTCAAGACTACTGAGCGTATTGGGCTTCAAAAATTGCTCCATATTTCCGAAGT
AGACCTAACAACAATTTCTGAAGAAACAGTGGCTTTCAAACTAGCCCCTCAACTCAATGCCTTAGGACGTTTAGACGATC
CAAACCCAGCTATTGAACTATTAACCGGATTTGACGATGAGGAAGCGCAAGCTATTGCTCTGGAAATCAATGCCAAAAAT
GAAGAACGTAAGGATGTTGTTCAAAACATCTTTGATGAAGCCATGAGCATGGTAGACTTAGATAAACCAGTTCAGGTTTT
GGCTAAGGAAGGCTGGCATCCTGGTGTACTCGGCATTGTTGCTGGTCGTATCATGGAGCAAATCAGTCAGACAGTAGTGG
TTTTAAATATTGAAGATGGCTTGGCTAAGGGGTCAGCTCGTAGTTTGGAGTCTATCAATATCTTCCATGCACTTGATGAC
CACAGAGACATCTTTACTGCATTTGGAGGGCACGCTGGAGCAGCTGGTATGACCCTTCCAGAGGAAAATCTTACTCAACT
CTCAGATATTTTATGTAGTTATGTCTACGATAATGACATTGATACGAGTGCCAAAAATACGCTTAATTTAGACGAGGAGC
TACAACTCGGTGAGCTTAGCTTGGATACCATAAGGAGCCTCGAAAAACTAGCACCTTTTGGTATGGATAATAAAAAGCCA
GTCTTTTGGCTACATGATATTTCCGTTATTCAAGCTAGAACTATGGGGCAAAATGGAGCTCATCTTAAGTTCAAGGTTAA
GCAAGGCAAGGCTAGTTTTGATGTTGTCGCCTTTAACAAAGGGCATCTGCTTCAAGAATTTCAGCAAGCTCAGGGGTTGG
AATTAGCAGTGACATTGTCCGTTAATGTATGGAATGGCCAGAAAACACTACAGCTCATGTTGGAAGATGTGCGCGTGGAC
GATGTTCAGTTATTTGATTTTCGCTCAAAAAATATGGTACTACCTGAGGGCCTACCAACTGTAGAAGAGGCCTCAGACGA
AGCAACTGCAGTTGTCCTCGACACCCTACCGAATTCAGAGACGGAATTAAAAGAGTGGTTTGACGGTAAGGAATTCCAGG
CCATTTATTTTAAGAATCGCATTAAGAAAGCCTATTATCTGACAGGCTATGGAACTAGAGAGCAATTTGCAAGGCTCTAT
AAAACCATTTATCAATTCCCAGAATTTGATGTGCGCTATAAATTAGATGACCTCAGTCATTATCTTAAGATTGATAAAAT
TCTTCTCATCAAGATGATTCAAATTTTTGATGAATTGGACTTTGTCACTATTGATAATGGTGTCATGACAGTTAATAAAG
AGGCTGGAAAACGTGATATTGAGGAAAGCAAGATTTTCCAGGACCTTAAACGTCTTGTCAAGTTCCAAGAACTCATGGCT
TTGGGAACACCACAGGAAATTTATGATTGGCTCTACAAGCAGGAGCAGTAG

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(582-731)

DHHA1 domain (DHHA1)

(317-431)

RecJ OB domain (RecJ_OB)

(451-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

66.216

100

0.666
  recJ Bacillus subtilis subsp. subtilis str. 168

37.037

100

0.394