Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ABN702_RS20110 Genome accession   NZ_CP158164
Coordinates   3942894..3943175 (+) Length   93 a.a.
NCBI ID   WP_204419855.1    Uniprot ID   -
Organism   Bacillus sp. CSS-39     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3937894..3948175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN702_RS20095 (ABN702_20055) - 3938013..3939215 (-) 1203 WP_417898404.1 ubiquitin-like domain-containing protein -
  ABN702_RS20100 (ABN702_20060) - 3939442..3940209 (-) 768 WP_417898405.1 TatD family hydrolase -
  ABN702_RS20105 (ABN702_20065) metG 3940349..3942355 (-) 2007 WP_417898406.1 methionine--tRNA ligase -
  ABN702_RS20110 (ABN702_20070) abrB 3942894..3943175 (+) 282 WP_204419855.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ABN702_RS20115 (ABN702_20075) - 3943789..3945246 (+) 1458 WP_417897474.1 IS1182 family transposase -
  ABN702_RS20120 (ABN702_20080) rsmI 3945548..3946423 (-) 876 WP_417900984.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ABN702_RS20125 (ABN702_20085) - 3946487..3947236 (-) 750 WP_417898407.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ABN702_RS20130 (ABN702_20090) yabA 3947332..3947700 (-) 369 WP_417898408.1 DNA replication initiation control protein YabA -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10384.09 Da        Isoelectric Point: 5.2185

>NTDB_id=1010051 ABN702_RS20110 WP_204419855.1 3942894..3943175(+) (abrB) [Bacillus sp. CSS-39]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDNNLTLADGKIILSREGAE
KIIEEIQNSLTAK

Nucleotide


Download         Length: 282 bp        

>NTDB_id=1010051 ABN702_RS20110 WP_204419855.1 3942894..3943175(+) (abrB) [Bacillus sp. CSS-39]
ATGAAATCTACTGGTATTGTACGTAAAGTTGACGAGCTAGGCCGCGTGGTTATTCCTATCGAGCTTCGCAGAACATTAGG
AATTGCTGAGAAAGATGCTTTAGAAATCTATGTGGATGACGAAAAAATCATCTTAAAGAAATACAAGCCAAACATGACTT
GCCAAGTTACTGGCGAAGTTTCTGATAACAACCTTACACTTGCAGATGGCAAAATCATCTTAAGCCGTGAAGGTGCAGAA
AAAATCATCGAAGAGATCCAAAACAGCTTAACTGCAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

90

96.774

0.871

Multiple sequence alignment