Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QUE58_RS10300 Genome accession   NZ_AP027423
Coordinates   1638229..1638858 (+) Length   209 a.a.
NCBI ID   WP_106689295.1    Uniprot ID   -
Organism   Escherichia coli strain EC261 isolate EC261     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1633229..1643858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE58_RS10280 (MUTS7_19780) ycbZ 1633630..1635390 (-) 1761 WP_000156526.1 Lon protease family protein -
  QUE58_RS10285 (MUTS7_19790) matP 1635576..1636028 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QUE58_RS10290 (MUTS7_19800) ompA 1636104..1637144 (-) 1041 WP_000750416.1 porin OmpA -
  QUE58_RS10295 (MUTS7_19820) sulA 1637501..1638010 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QUE58_RS10300 (MUTS7_19830) sxy/tfoX 1638229..1638858 (+) 630 WP_106689295.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QUE58_RS10305 (MUTS7_19840) yccS 1638821..1640983 (-) 2163 WP_000875020.1 YccS family putative transporter -
  QUE58_RS10310 (MUTS7_19850) yccF 1640993..1641439 (-) 447 WP_001261231.1 YccF domain-containing protein -
  QUE58_RS10315 (MUTS7_19870) helD 1641562..1643616 (+) 2055 WP_000420533.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24175.07 Da        Isoelectric Point: 9.2180

>NTDB_id=101005 QUE58_RS10300 WP_106689295.1 1638229..1638858(+) (sxy/tfoX) [Escherichia coli strain EC261 isolate EC261]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGVKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=101005 QUE58_RS10300 WP_106689295.1 1638229..1638858(+) (sxy/tfoX) [Escherichia coli strain EC261 isolate EC261]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGTAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment