Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ABN702_RS11240 Genome accession   NZ_CP158164
Coordinates   2210835..2211314 (+) Length   159 a.a.
NCBI ID   WP_417900726.1    Uniprot ID   -
Organism   Bacillus sp. CSS-39     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2205835..2216314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN702_RS11225 (ABN702_11205) - 2207023..2208537 (-) 1515 WP_417900723.1 exopolyphosphatase -
  ABN702_RS11230 (ABN702_11210) - 2208638..2209135 (+) 498 WP_417900724.1 L,D-transpeptidase family protein -
  ABN702_RS11235 (ABN702_11215) - 2209235..2210758 (+) 1524 WP_417900725.1 HD-GYP domain-containing protein -
  ABN702_RS11240 (ABN702_11220) kre 2210835..2211314 (+) 480 WP_417900726.1 YkyB family protein Regulator
  ABN702_RS11245 (ABN702_11225) - 2211353..2212066 (-) 714 WP_417900727.1 alpha/beta fold hydrolase -
  ABN702_RS11250 (ABN702_11230) - 2212080..2212982 (-) 903 WP_417900728.1 chemotaxis protein -
  ABN702_RS11255 (ABN702_11235) - 2213063..2213530 (-) 468 WP_417900729.1 hypothetical protein -
  ABN702_RS11260 (ABN702_11240) - 2213662..2214318 (+) 657 WP_417900882.1 HAD family hydrolase -
  ABN702_RS11265 (ABN702_11245) treR 2214904..2215611 (-) 708 WP_417900730.1 trehalose operon repressor -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 18313.73 Da        Isoelectric Point: 10.3086

>NTDB_id=1010031 ABN702_RS11240 WP_417900726.1 2210835..2211314(+) (kre) [Bacillus sp. CSS-39]
MPNQRYTNQRNTEAPLQSSIENLSRAIFTVNRHAKTAPDPKFLYSLKRQALEKLLAEGKATKKGLHFSKNPKNSRQQSDV
LVSAGDYFFHLPPTKEDFSELPHLGELNDHYRNPKANMSLSVAKNLLQQYANYYPTEDKKQPGKKTYQKPVFKRLGESY

Nucleotide


Download         Length: 480 bp        

>NTDB_id=1010031 ABN702_RS11240 WP_417900726.1 2210835..2211314(+) (kre) [Bacillus sp. CSS-39]
ATGCCCAATCAACGCTATACAAATCAAAGAAATACAGAAGCCCCACTGCAATCTTCTATCGAAAACCTCTCTCGTGCCAT
TTTTACGGTGAATCGCCATGCGAAAACTGCACCAGATCCAAAATTTCTTTACTCTTTAAAGCGCCAAGCACTTGAAAAGC
TTCTTGCAGAAGGCAAGGCTACCAAAAAGGGGCTGCACTTTTCCAAAAATCCGAAAAACAGCCGCCAGCAGTCGGATGTG
CTAGTGTCAGCCGGGGATTATTTCTTTCATCTTCCACCAACGAAGGAGGACTTCTCGGAACTGCCTCATCTTGGTGAACT
GAATGACCATTATCGAAATCCGAAAGCGAATATGTCCTTATCGGTAGCCAAAAACTTGCTTCAGCAATACGCGAACTACT
ACCCAACAGAAGATAAAAAACAACCGGGCAAGAAAACCTATCAAAAGCCGGTATTCAAACGCCTAGGAGAAAGCTACTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(20-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

63.946

92.453

0.591

Multiple sequence alignment