Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ABN702_RS07240 Genome accession   NZ_CP158164
Coordinates   1432176..1432775 (-) Length   199 a.a.
NCBI ID   WP_417900047.1    Uniprot ID   -
Organism   Bacillus sp. CSS-39     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1427176..1437775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN702_RS07220 (ABN702_07200) - 1427423..1428133 (+) 711 WP_417900043.1 DnaD domain protein -
  ABN702_RS07225 (ABN702_07205) nth 1428257..1428910 (+) 654 WP_417900044.1 endonuclease III -
  ABN702_RS07230 (ABN702_07210) - 1428907..1429413 (+) 507 WP_417900045.1 YpoC family protein -
  ABN702_RS07235 (ABN702_07215) - 1429443..1432133 (-) 2691 WP_417900046.1 transglycosylase domain-containing protein -
  ABN702_RS07240 (ABN702_07220) recU 1432176..1432775 (-) 600 WP_417900047.1 Holliday junction resolvase RecU Machinery gene
  ABN702_RS07245 (ABN702_07225) - 1432872..1433888 (+) 1017 WP_417900048.1 DUF2515 family protein -
  ABN702_RS07250 (ABN702_07230) - 1433957..1434079 (-) 123 WP_417900049.1 spore protein -
  ABN702_RS07255 (ABN702_07235) - 1434258..1434518 (+) 261 WP_417900050.1 hypothetical protein -
  ABN702_RS07260 (ABN702_07240) - 1434563..1434922 (+) 360 WP_417900051.1 YppE family protein -
  ABN702_RS07265 (ABN702_07245) - 1434964..1435128 (-) 165 WP_204414563.1 hypothetical protein -
  ABN702_RS07270 (ABN702_07250) yppF 1435237..1435440 (-) 204 WP_204414562.1 YppF family protein -
  ABN702_RS07275 (ABN702_07255) - 1435653..1436267 (+) 615 WP_417900052.1 YppG family protein -
  ABN702_RS07280 (ABN702_07260) - 1436362..1436610 (-) 249 WP_417900053.1 sporulation protein -
  ABN702_RS07285 (ABN702_07265) - 1436603..1436788 (-) 186 WP_224840179.1 hypothetical protein -
  ABN702_RS07290 (ABN702_07270) - 1436944..1437093 (+) 150 WP_417900054.1 hypothetical protein -
  ABN702_RS07295 (ABN702_07275) - 1437133..1437606 (-) 474 WP_417900055.1 Hsp20/alpha crystallin family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 23342.78 Da        Isoelectric Point: 9.4272

>NTDB_id=1010026 ABN702_RS07240 WP_417900047.1 1432176..1432775(-) (recU) [Bacillus sp. CSS-39]
MNIRYPNGKVFQSTANTSSKNKAPVLYGNRGMTLEDDLHETNLYYLHHQIAVVHKKPTPIQIVDVHYPKRSAAVIKEAYF
KQASTTDFNGVYKGKYIDFEAKETKNKTSFPLQNFHEHQIQHMQQVVKQNGICFVILLFRVFNEVYLLPAERLFYYWERK
EAGERKSITKQEVEKDGYLIPIGFQPRIDYIKIIDSVYC

Nucleotide


Download         Length: 600 bp        

>NTDB_id=1010026 ABN702_RS07240 WP_417900047.1 1432176..1432775(-) (recU) [Bacillus sp. CSS-39]
ATGAATATCCGATACCCAAACGGAAAAGTATTTCAGTCAACCGCAAATACGTCTTCTAAAAACAAGGCTCCCGTCTTATA
CGGAAACAGAGGAATGACACTTGAGGACGACTTGCATGAAACCAATTTGTACTATCTGCATCATCAGATTGCTGTTGTTC
ATAAAAAGCCCACACCCATTCAGATTGTAGATGTCCATTATCCGAAAAGAAGTGCGGCGGTCATCAAGGAAGCCTACTTC
AAACAGGCATCCACCACTGACTTTAATGGAGTATACAAAGGGAAATATATTGATTTTGAAGCGAAGGAAACCAAAAATAA
AACTTCCTTTCCGCTTCAGAATTTCCATGAACATCAGATTCAACATATGCAGCAGGTAGTGAAACAAAATGGAATCTGTT
TCGTCATATTATTGTTCCGTGTTTTTAATGAAGTCTATTTGCTGCCGGCTGAAAGGTTGTTTTATTACTGGGAGAGAAAA
GAAGCTGGGGAAAGAAAATCAATTACAAAGCAAGAGGTTGAAAAGGACGGGTACTTGATACCTATAGGTTTTCAGCCAAG
AATTGATTATATTAAAATAATAGACAGTGTCTATTGCTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

68.844

100

0.688

Multiple sequence alignment