Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ABN702_RS05175 Genome accession   NZ_CP158164
Coordinates   1060509..1062215 (+) Length   568 a.a.
NCBI ID   WP_417899683.1    Uniprot ID   -
Organism   Bacillus sp. CSS-39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1055509..1067215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN702_RS05155 (ABN702_05135) - 1055651..1056547 (+) 897 WP_417899681.1 polyprenyl synthetase family protein -
  ABN702_RS05160 (ABN702_05140) dxs 1056976..1058828 (+) 1853 Protein_1001 1-deoxy-D-xylulose-5-phosphate synthase -
  ABN702_RS05165 (ABN702_05145) - 1058832..1059665 (+) 834 WP_417900833.1 TlyA family RNA methyltransferase -
  ABN702_RS05170 (ABN702_05150) ahrC 1059787..1060236 (+) 450 WP_417899682.1 transcriptional regulator AhrC/ArgR -
  ABN702_RS05175 (ABN702_05155) recN 1060509..1062215 (+) 1707 WP_417899683.1 DNA repair protein RecN Machinery gene
  ABN702_RS05180 (ABN702_05160) spoIVB 1062602..1063893 (+) 1292 Protein_1005 SpoIVB peptidase -
  ABN702_RS05185 (ABN702_05165) spo0A 1064365..1065156 (+) 792 Protein_1006 sporulation transcription factor Spo0A -
  ABN702_RS05190 (ABN702_05170) - 1065330..1065476 (-) 147 WP_417899684.1 YycC family protein -
  ABN702_RS05195 (ABN702_05175) - 1065576..1066295 (+) 720 WP_417899685.1 glycerophosphodiester phosphodiesterase -
  ABN702_RS05200 (ABN702_05180) - 1066337..1066570 (-) 234 WP_417899686.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 64587.53 Da        Isoelectric Point: 4.9006

>NTDB_id=1010025 ABN702_RS05175 WP_417899683.1 1060509..1062215(+) (recN) [Bacillus sp. CSS-39]
MIAELTIKNFAIIESLSISFDKGLTVLTGETGAGKSIIIDAIHLLAGGRGSHEFVRFGEKRAELEGLFLLEDESHPCYRV
CQELGIDIEDEMVVLRREIHATGKSVCRVNGKLVTIALLREVGQTLVDIHGQHEHQELMDPDLHLALLDQFGGKAVQKEL
QAYSEIYKEYKDVEKRLLHLTENEQKVAHRLDLLQFQAEEINNAQLTLNEDEELFEERTKISNYERLYQSLNNCYYSMHG
EQKALDWIGQAMSEAEGLEEIDKNLKDVFDTISNSYYQLEELSYRLRDEIDQLEFDPKRLDFIESRLNEIKQLKRKYGSS
VEEILEYASKIEEELETLQNRDSHIHQLQESLQSLKEDLALEAKALTEARMKAAAKLTKSIHKELKDLYLEKAIFDVHFE
VRKEKGQDGFLFQKNGVDMVEFYLTTNPGEPLKPMAKVASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVAQS
IAEKIYQVSVDSQVLCISHLPQVAAMSDTHLFISKEVKGERTKTKVNVLGEEEKIREIGRMISGVEITSLTKEHAKELLE
LAGSMKQA

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=1010025 ABN702_RS05175 WP_417899683.1 1060509..1062215(+) (recN) [Bacillus sp. CSS-39]
ATGATTGCAGAATTAACGATTAAAAATTTTGCTATTATCGAATCTCTGTCAATCTCTTTTGATAAAGGTCTGACTGTGCT
GACAGGTGAAACAGGTGCCGGGAAATCCATTATCATCGATGCGATCCACCTGCTGGCTGGTGGACGGGGCTCCCATGAAT
TTGTGCGATTCGGAGAGAAGCGTGCAGAGCTTGAGGGGCTGTTCCTGCTTGAGGACGAGTCCCATCCATGCTATAGGGTC
TGCCAAGAGCTTGGCATTGATATTGAAGACGAGATGGTTGTATTGAGAAGGGAAATCCATGCGACAGGAAAGAGTGTGTG
CAGGGTGAATGGAAAGCTCGTTACAATCGCTCTTTTACGAGAAGTGGGACAAACCCTGGTCGATATTCATGGGCAGCACG
AGCATCAGGAGCTCATGGATCCTGATCTTCATCTGGCACTCCTAGATCAGTTCGGCGGCAAAGCGGTTCAAAAGGAGCTA
CAGGCCTATTCAGAAATATATAAAGAGTACAAAGATGTGGAAAAGCGTCTTCTTCACTTGACGGAAAACGAGCAGAAAGT
GGCACACCGCCTTGATCTGCTGCAATTCCAGGCAGAGGAAATCAACAATGCCCAGCTTACGCTCAATGAGGATGAAGAGC
TTTTTGAGGAACGAACCAAAATCAGCAACTACGAACGTCTTTATCAATCCCTGAACAACTGCTACTATTCGATGCATGGT
GAACAAAAGGCACTTGATTGGATCGGACAGGCCATGTCTGAAGCGGAAGGCTTGGAGGAGATCGATAAGAATCTGAAGGA
TGTTTTTGATACAATTTCCAACTCCTACTATCAGCTTGAGGAGTTATCCTATCGACTGCGGGACGAAATCGATCAGCTGG
AATTCGATCCAAAGCGCCTGGATTTCATAGAAAGCAGATTGAATGAAATCAAGCAGCTGAAAAGGAAGTATGGCAGTTCC
GTTGAGGAAATCCTGGAATACGCCTCTAAAATCGAGGAAGAGCTGGAGACCCTGCAGAACCGTGACTCTCACATACACCA
GCTTCAGGAATCGCTCCAATCATTAAAAGAGGATCTCGCATTGGAAGCCAAAGCGTTGACGGAAGCCCGCATGAAGGCTG
CTGCCAAGCTCACAAAGAGCATTCATAAGGAACTTAAAGATCTTTATTTGGAAAAAGCGATATTCGACGTCCATTTTGAA
GTGAGAAAAGAAAAGGGGCAAGACGGTTTTCTTTTTCAGAAGAATGGAGTGGATATGGTGGAGTTCTATCTCACCACCAA
CCCTGGCGAACCGCTAAAGCCGATGGCAAAGGTAGCTTCAGGAGGAGAGCTTTCTCGAATCATGCTGGCGCTGAAGAGCA
TTTTCTCTAAGCATCAGGGAATTACTTCAATCATCTTTGATGAAGTGGATACTGGTGTAAGCGGTCGTGTCGCACAAAGC
ATCGCAGAGAAGATCTATCAGGTATCCGTGGATTCACAGGTGCTCTGCATCTCCCACCTGCCGCAAGTGGCTGCCATGTC
CGATACCCATCTCTTCATCAGCAAGGAAGTAAAGGGAGAACGGACAAAAACCAAAGTGAACGTGCTTGGGGAAGAAGAAA
AAATCCGCGAAATCGGCCGGATGATCTCAGGTGTCGAAATCACGAGTCTCACCAAAGAGCATGCAAAAGAATTACTGGAG
CTTGCCGGCAGTATGAAGCAGGCTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.174

100

0.609

Multiple sequence alignment