Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ABN702_RS04365 Genome accession   NZ_CP158164
Coordinates   908884..909645 (+) Length   253 a.a.
NCBI ID   WP_417899552.1    Uniprot ID   -
Organism   Bacillus sp. CSS-39     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 903884..914645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN702_RS04335 (ABN702_04315) - 903944..906175 (+) 2232 WP_417899547.1 HD family phosphohydrolase -
  ABN702_RS04340 (ABN702_04320) ybeY 906172..906651 (+) 480 WP_417899548.1 rRNA maturation RNase YbeY -
  ABN702_RS04345 (ABN702_04325) - 906623..907021 (+) 399 WP_417899549.1 diacylglycerol kinase family protein -
  ABN702_RS04350 (ABN702_04330) - 907140..907538 (+) 399 WP_417899550.1 cytidine deaminase -
  ABN702_RS04355 (ABN702_04335) era 907531..908445 (+) 915 WP_417899551.1 GTPase Era -
  ABN702_RS04360 (ABN702_04340) - 908634..908774 (+) 141 WP_204415876.1 YqzL family protein -
  ABN702_RS04365 (ABN702_04345) recO 908884..909645 (+) 762 WP_417899552.1 DNA repair protein RecO Machinery gene
  ABN702_RS04370 (ABN702_04350) glyQ 909960..910847 (+) 888 WP_417899553.1 glycine--tRNA ligase subunit alpha -
  ABN702_RS04375 (ABN702_04355) glyS 910840..912921 (+) 2082 WP_417899554.1 glycine--tRNA ligase subunit beta -
  ABN702_RS04380 (ABN702_04360) - 913237..913866 (+) 630 WP_417900822.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 28931.60 Da        Isoelectric Point: 8.6355

>NTDB_id=1010023 ABN702_RS04365 WP_417899552.1 908884..909645(+) (recO) [Bacillus sp. CSS-39]
MLHKCEGIVIRTNAYGENNKIVTLYTKELGKVGVMARGANKPSSRLTAVSQLFSHGTYVFQKGSGLGSLQQGDIMESMRA
IREDIFLTAYCSFVVELMDRVTEERNRNPHLYELLYLTLHYINDGMDAEILTFIYQMKMLDVIGITPELNKCASCASTEG
TYAFSIKEGGFICHRCFHKDPYLIKASPAALRLLRTFYYYDLHRIGNLSLKEETRAELRLIIDEYYEAYSGIMLKSKRFL
KQIGTLKVNLDKK

Nucleotide


Download         Length: 762 bp        

>NTDB_id=1010023 ABN702_RS04365 WP_417899552.1 908884..909645(+) (recO) [Bacillus sp. CSS-39]
TTGCTACATAAGTGTGAAGGGATAGTTATCAGAACAAATGCCTACGGAGAAAACAATAAAATTGTGACTTTGTATACGAA
GGAATTGGGGAAAGTGGGTGTAATGGCAAGAGGGGCCAATAAACCGAGCAGCCGGTTGACGGCAGTTTCCCAGCTGTTTT
CACATGGCACTTATGTTTTCCAGAAAGGAAGCGGCCTTGGAAGCCTGCAGCAGGGAGATATTATGGAGTCGATGCGGGCC
ATAAGGGAAGATATCTTCCTGACCGCCTATTGCTCATTTGTGGTGGAACTCATGGACCGGGTTACAGAAGAAAGAAACCG
CAACCCTCATCTATACGAACTACTTTATCTGACTCTACACTATATCAATGATGGAATGGATGCAGAAATATTAACGTTCA
TTTATCAGATGAAAATGCTCGATGTAATCGGAATAACACCTGAATTGAATAAATGTGCCTCCTGTGCAAGCACGGAAGGT
ACTTATGCTTTTTCCATAAAGGAAGGCGGCTTTATTTGTCATCGCTGCTTTCATAAGGATCCATATCTTATCAAGGCCTC
ACCAGCAGCTTTAAGGCTTTTGAGAACCTTTTATTATTACGATCTGCATCGAATAGGAAACCTGTCTCTTAAAGAGGAAA
CACGAGCTGAGCTGCGTCTGATCATTGATGAATATTACGAGGCATATTCAGGGATAATGTTAAAATCCAAACGGTTCCTT
AAACAGATTGGGACGTTAAAAGTAAATCTTGATAAAAAATAG

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

61.943

97.628

0.605

Multiple sequence alignment