Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ABN702_RS03800 Genome accession   NZ_CP158164
Coordinates   794592..796937 (+) Length   781 a.a.
NCBI ID   WP_417899462.1    Uniprot ID   -
Organism   Bacillus sp. CSS-39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 789592..801937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN702_RS03780 (ABN702_03760) - 789828..790109 (+) 282 WP_417899458.1 post-transcriptional regulator -
  ABN702_RS03785 (ABN702_03765) secDF 790310..792562 (+) 2253 WP_417899459.1 protein translocase subunit SecDF -
  ABN702_RS03790 (ABN702_03770) - 792675..793568 (+) 894 WP_417899460.1 cation diffusion facilitator family transporter -
  ABN702_RS03795 (ABN702_03775) - 793596..793895 (+) 300 WP_417899461.1 LapA family protein -
  ABN702_RS03800 (ABN702_03780) recJ 794592..796937 (+) 2346 WP_417899462.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ABN702_RS03805 (ABN702_03785) - 796952..797464 (+) 513 WP_386640470.1 adenine phosphoribosyltransferase -
  ABN702_RS03810 (ABN702_03790) - 797797..799992 (+) 2196 WP_417899463.1 RelA/SpoT family protein -
  ABN702_RS03815 (ABN702_03795) dtd 800009..800449 (+) 441 WP_417899464.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 781 a.a.        Molecular weight: 88161.41 Da        Isoelectric Point: 5.0336

>NTDB_id=1010020 ABN702_RS03800 WP_417899462.1 794592..796937(+) (recJ) [Bacillus sp. CSS-39]
MLASKSRWNVNKPDQEQVRNLAESLKVAPLIASLLVNRGLDDYETAKSFLNTETQEFHDPFLLEDMEKVVQRIETAIQNE
EKILVFGDYDADGVSSTTVMVTALREKGAKVDFYIPNRFTEGYGPNETAFRQAKESGYSIIITVDTGISALHEADVARDL
GVDLIITDHHEPGPVLPDAFAIIHPKKETCPYPFKDLAGVGVSYKVAHALLGKNPEHLLEVAAIGTIADLVPLVDENRLL
ASKGIKKMQQTKRVGLKALLQKCGVELHTITEETIGFSIGPRINAVGRLDNADPAVHLLMTEDAEEAKALAEEMEAYNKE
RQQIVTQITEEAIKQVEEMYPPDENSFLIVAGHNWNAGVIGIVASRLVDRFYRPTIVLSLDGEKGLAKGSARSIPGFDLF
ENLSTCRDILPHFGGHPMAAGMTLKLENVDELRDRMKQIADTILTEEDFTPITEVDIECELNEITLETIEQLEKLAPFGI
ANPKPKVLVKGALPQQIRQIGNKSNHLKLVIEKEGSSLDCVGFGFGETYHHVSPIASLDVLGELAINEWNNFRKPQLFVK
DLRIAEWQLFDIRSAKQLNQTLQGIDKKNLQILFFNTATLEEVKIGEEHLPYLTNVEPGTEIDVEDKYIVLLDIPNEEET
LASLLRNSSPSRIYASFHQKENHYFSTIPTRDHFKWYYGFLSKKGPFDLNRYAEEIAKHRGWSKETIDFMSQVFFELEFV
TIDKGFIALNNAAKKRDFEESQTYRKKQQQVMLENLFLYSSYKQLKAWFDQHLTKQCTVHS

Nucleotide


Download         Length: 2346 bp        

>NTDB_id=1010020 ABN702_RS03800 WP_417899462.1 794592..796937(+) (recJ) [Bacillus sp. CSS-39]
TTGCTAGCTTCTAAATCACGTTGGAATGTAAATAAGCCTGACCAAGAGCAGGTACGGAATTTGGCGGAAAGCCTGAAAGT
GGCTCCTCTTATTGCTTCTCTCCTTGTAAACCGGGGACTGGATGATTATGAGACCGCGAAAAGTTTTTTGAATACAGAGA
CCCAAGAATTTCACGACCCATTCCTGTTGGAAGACATGGAAAAGGTCGTTCAGAGAATAGAAACGGCAATACAGAATGAA
GAAAAGATTTTGGTATTCGGCGATTATGATGCCGATGGAGTAAGCAGTACCACTGTGATGGTTACAGCTCTCAGAGAAAA
GGGAGCGAAGGTGGATTTCTATATCCCCAACCGTTTTACAGAAGGTTATGGACCAAATGAAACTGCATTCAGGCAAGCCA
AGGAAAGCGGCTATTCCATCATCATCACAGTTGATACCGGAATTTCCGCTCTGCATGAAGCGGATGTGGCAAGGGATCTG
GGCGTCGACCTGATCATTACCGACCACCACGAGCCTGGGCCAGTTCTACCGGATGCATTTGCCATCATCCATCCTAAGAA
AGAAACGTGCCCTTATCCATTCAAAGACCTTGCAGGAGTGGGCGTCTCTTATAAAGTGGCTCATGCGCTATTAGGGAAGA
ACCCGGAGCACCTACTGGAAGTGGCGGCTATTGGAACGATTGCTGACCTTGTACCTCTGGTGGATGAAAATAGACTTTTA
GCATCCAAAGGGATCAAAAAGATGCAGCAGACAAAAAGAGTCGGATTAAAGGCCTTGCTGCAAAAATGTGGAGTAGAACT
CCATACCATTACAGAAGAAACGATCGGGTTCTCCATCGGACCAAGGATCAATGCGGTGGGACGCCTCGACAATGCAGATC
CAGCCGTACATCTTCTAATGACAGAAGATGCGGAAGAAGCAAAAGCGCTAGCCGAGGAAATGGAAGCCTACAATAAAGAA
AGACAGCAGATTGTTACGCAAATTACCGAAGAAGCGATCAAACAAGTCGAGGAAATGTACCCTCCTGATGAGAATTCGTT
TCTGATCGTAGCAGGACATAACTGGAATGCGGGAGTCATCGGTATAGTGGCCTCAAGGCTGGTGGACCGTTTCTATCGAC
CGACCATCGTGCTGAGCCTTGATGGGGAAAAGGGCCTTGCAAAAGGATCTGCCCGTTCCATACCGGGGTTTGACCTGTTC
GAAAACCTATCCACTTGCAGGGATATTCTCCCGCACTTTGGCGGCCATCCGATGGCAGCTGGTATGACATTGAAATTGGA
AAATGTGGACGAGCTTCGCGACCGAATGAAGCAAATTGCTGATACCATTTTGACGGAGGAAGATTTCACCCCGATCACTG
AAGTGGATATCGAATGTGAACTGAACGAAATAACATTGGAAACAATCGAGCAGTTAGAGAAGCTTGCACCATTCGGCATT
GCAAATCCAAAGCCTAAAGTATTGGTGAAAGGTGCATTGCCGCAGCAGATTCGTCAGATTGGCAATAAGAGCAACCACCT
GAAGCTTGTCATCGAGAAGGAAGGAAGCTCGCTCGATTGTGTCGGGTTCGGATTTGGGGAAACCTATCACCATGTGTCAC
CAATTGCGTCACTTGATGTTTTGGGGGAGCTTGCCATCAATGAGTGGAATAATTTCCGAAAGCCTCAGCTTTTTGTAAAA
GACCTTAGAATTGCAGAGTGGCAACTGTTTGATATTCGTTCAGCAAAGCAGCTGAATCAAACATTGCAAGGAATAGATAA
GAAGAATCTACAAATACTGTTCTTTAATACTGCAACATTGGAAGAAGTGAAAATAGGTGAGGAACATCTGCCTTATCTAA
CGAATGTTGAACCAGGAACAGAAATCGATGTTGAGGATAAATATATCGTGCTGCTGGATATTCCGAACGAAGAGGAAACA
CTTGCAAGCCTTTTGCGAAACTCTTCCCCATCCCGCATCTACGCTTCTTTTCATCAAAAAGAAAATCATTATTTTTCCAC
CATCCCGACTCGCGACCACTTTAAGTGGTATTACGGCTTCCTGTCCAAAAAAGGTCCGTTTGATTTGAACAGGTATGCCG
AAGAAATCGCGAAACATCGGGGTTGGTCAAAAGAAACAATAGATTTCATGTCACAGGTGTTTTTTGAACTAGAATTTGTT
ACAATAGACAAGGGCTTTATCGCATTGAACAATGCGGCGAAAAAACGGGATTTTGAAGAGTCTCAGACATATCGCAAAAA
GCAGCAGCAAGTGATGCTTGAAAACTTGTTTTTATACTCTTCATATAAACAATTAAAAGCGTGGTTTGATCAGCATCTAA
CCAAACAGTGCACTGTTCATTCATAG

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-769)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(308-439)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.47

99.616

0.533

Multiple sequence alignment