Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ABN702_RS00835 Genome accession   NZ_CP158164
Coordinates   177202..177531 (-) Length   109 a.a.
NCBI ID   WP_417898992.1    Uniprot ID   -
Organism   Bacillus sp. CSS-39     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 172202..182531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN702_RS00815 (ABN702_00805) - 172638..172907 (+) 270 WP_417898988.1 PqqD family protein -
  ABN702_RS00820 (ABN702_00810) - 173352..175160 (+) 1809 WP_417898989.1 ABC transporter ATP-binding protein -
  ABN702_RS00825 (ABN702_00815) - 175176..176192 (+) 1017 WP_417898990.1 nucleotidyltransferase family protein -
  ABN702_RS00830 (ABN702_00820) - 176211..177182 (+) 972 WP_417898991.1 metallophosphoesterase -
  ABN702_RS00835 (ABN702_00825) sinR 177202..177531 (-) 330 WP_417898992.1 helix-turn-helix domain-containing protein Regulator
  ABN702_RS00840 (ABN702_00830) - 177621..177767 (-) 147 WP_417898993.1 anti-repressor SinI family protein -
  ABN702_RS00845 (ABN702_00835) - 178355..179095 (+) 741 WP_417898994.1 alpha/beta hydrolase -
  ABN702_RS00850 (ABN702_00840) rnr 179152..181524 (+) 2373 WP_417898995.1 ribonuclease R -
  ABN702_RS00855 (ABN702_00845) smpB 181624..182091 (+) 468 WP_204412412.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 12653.32 Da        Isoelectric Point: 9.5382

>NTDB_id=1010012 ABN702_RS00835 WP_417898992.1 177202..177531(-) (sinR) [Bacillus sp. CSS-39]
MIGERIKKYRAQRKMSMSELADRAGVAKSYLSSIERNLQSNPSVQFLEKVSSVLGVSVNTLLHDNDEKENLDREWATLVR
EAMDSGVTKDQFRDFLEFNKWKINQDNKK

Nucleotide


Download         Length: 330 bp        

>NTDB_id=1010012 ABN702_RS00835 WP_417898992.1 177202..177531(-) (sinR) [Bacillus sp. CSS-39]
ATGATTGGTGAACGAATTAAAAAATATAGAGCACAACGTAAAATGTCTATGTCAGAATTGGCAGATCGTGCTGGCGTAGC
AAAGTCTTACCTGAGTTCCATTGAAAGAAATTTACAATCCAACCCATCAGTACAATTCTTGGAAAAGGTGTCATCAGTTT
TAGGTGTGTCGGTGAATACCCTTCTGCATGATAATGATGAAAAAGAAAACCTTGATCGTGAATGGGCGACATTAGTAAGA
GAAGCAATGGATTCCGGAGTAACAAAAGATCAATTCCGTGATTTCCTGGAATTTAATAAATGGAAAATTAATCAGGATAA
TAAAAAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-59)

Anti-repressor SinI (SinI)

(71-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

64.815

99.083

0.642

Multiple sequence alignment