Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ABN702_RS00645 Genome accession   NZ_CP158164
Coordinates   137700..138077 (-) Length   125 a.a.
NCBI ID   WP_417898958.1    Uniprot ID   -
Organism   Bacillus sp. CSS-39     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 132700..143077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN702_RS00615 (ABN702_00615) eno 132941..134236 (+) 1296 WP_417898954.1 phosphopyruvate hydratase -
  ABN702_RS00620 - 135112..135396 (+) 285 WP_417901010.1 hypothetical protein -
  ABN702_RS00625 (ABN702_00620) - 135374..135565 (-) 192 WP_417898955.1 hypothetical protein -
  ABN702_RS00630 (ABN702_00625) secG 135942..136172 (+) 231 WP_386634630.1 preprotein translocase subunit SecG -
  ABN702_RS00635 (ABN702_00630) - 136211..137413 (-) 1203 WP_417898956.1 ATP-binding protein -
  ABN702_RS00640 (ABN702_00635) - 137579..137707 (-) 129 WP_417898957.1 anti-repressor SinI family protein -
  ABN702_RS00645 (ABN702_00640) sinR 137700..138077 (-) 378 WP_417898958.1 helix-turn-helix domain-containing protein Regulator
  ABN702_RS00650 (ABN702_00645) - 138634..139356 (+) 723 WP_417898959.1 YveK family protein -
  ABN702_RS00655 (ABN702_00650) - 139337..140005 (+) 669 WP_417898960.1 CpsD/CapB family tyrosine-protein kinase -
  ABN702_RS00660 (ABN702_00655) - 140251..142098 (+) 1848 WP_417898961.1 polysaccharide biosynthesis protein -
  ABN702_RS00665 (ABN702_00660) galU 142116..142994 (+) 879 WP_417898962.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14565.69 Da        Isoelectric Point: 9.8293

>NTDB_id=1010011 ABN702_RS00645 WP_417898958.1 137700..138077(-) (sinR) [Bacillus sp. CSS-39]
MIGERIRKLRKSKGYSLSELAEKAGVSKSYLSYLERDLQTNPSLQFLQKISLSLGTDIEYLLDGVSLAKVEKNRNIVDEE
WKKLIQKAIREGMTKEDFVKYRDYLQFQKWQMYSQKSSKEEGTSG

Nucleotide


Download         Length: 378 bp        

>NTDB_id=1010011 ABN702_RS00645 WP_417898958.1 137700..138077(-) (sinR) [Bacillus sp. CSS-39]
ATGATAGGAGAGCGGATTAGAAAGCTAAGGAAAAGCAAGGGGTATTCGTTAAGCGAGCTTGCTGAAAAAGCTGGCGTATC
AAAATCATATTTAAGCTATTTAGAACGGGATCTTCAAACAAATCCTTCGTTGCAGTTTCTTCAGAAAATATCATTAAGTT
TAGGGACAGACATAGAATATCTACTAGATGGGGTATCACTTGCTAAAGTAGAAAAAAACCGAAATATCGTAGATGAGGAA
TGGAAAAAATTAATCCAGAAAGCCATCCGAGAAGGTATGACAAAAGAGGACTTCGTTAAATATCGTGATTATCTCCAATT
TCAAAAATGGCAAATGTACAGTCAAAAAAGTAGTAAGGAGGAAGGCACAAGTGGCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

51.24

96.8

0.496

Multiple sequence alignment