Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   BIKONL_RS07840 Genome accession   NZ_CP158159
Coordinates   1733448..1733849 (+) Length   133 a.a.
NCBI ID   WP_010955560.1    Uniprot ID   -
Organism   Pseudomonas putida strain CRA-04     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1728448..1738849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIKONL_RS07810 (BIKONL_001574) - 1728510..1729514 (-) 1005 WP_003249311.1 aspartate carbamoyltransferase catalytic subunit -
  BIKONL_RS07815 (BIKONL_001575) pyrR 1729527..1730045 (-) 519 WP_003249313.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  BIKONL_RS07820 (BIKONL_001576) ruvX 1730095..1730523 (-) 429 WP_164721830.1 Holliday junction resolvase RuvX -
  BIKONL_RS07825 (BIKONL_001577) - 1730520..1731089 (-) 570 WP_003249318.1 YqgE/AlgH family protein -
  BIKONL_RS07830 (BIKONL_001578) - 1731259..1732164 (-) 906 WP_014592660.1 energy transducer TonB -
  BIKONL_RS07835 (BIKONL_001579) gshB 1732256..1733209 (-) 954 WP_010955561.1 glutathione synthase -
  BIKONL_RS07840 (BIKONL_001580) pilG 1733448..1733849 (+) 402 WP_010955560.1 response regulator Regulator
  BIKONL_RS07845 (BIKONL_001581) pilH 1733897..1734262 (+) 366 WP_003249327.1 twitching motility response regulator PilH -
  BIKONL_RS07850 (BIKONL_001582) - 1734259..1734813 (+) 555 WP_010955559.1 chemotaxis protein CheW -
  BIKONL_RS07855 (BIKONL_001583) - 1734861..1736885 (+) 2025 WP_232014163.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14602.85 Da        Isoelectric Point: 6.4772

>NTDB_id=1009994 BIKONL_RS07840 WP_010955560.1 1733448..1733849(+) (pilG) [Pseudomonas putida strain CRA-04]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQTCAVIKHNSAFKDTP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPGFAAPQQHAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=1009994 BIKONL_RS07840 WP_010955560.1 1733448..1733849(+) (pilG) [Pseudomonas putida strain CRA-04]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGTGAAGC
GGGCTGCGAGGTGATCACCGCCAGCGATGGCTTCGATGCCCTGGCCAAGATCGTCGACCATCAGCCCAGTATCATTTTCG
TCGATGTGCTGATGCCACGCCTGGACGGCTACCAGACCTGCGCGGTAATCAAGCACAACAGTGCCTTCAAGGACACCCCG
GTTATCCTGCTGTCGTCCCGCGATGGCCTGTTCGACAAGGCCCGCGGGCGGGTGGTCGGTTCCGATCAGTTCCTGACCAA
ACCGTTCAGCAAGGAAGAACTGCTCGACGCGATCCGCGCCCATGTGCCCGGGTTTGCCGCACCTCAACAACACGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70

90.226

0.632

Multiple sequence alignment