Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   H0514_RS04955 Genome accession   NZ_LR822020
Coordinates   971861..972931 (+) Length   356 a.a.
NCBI ID   WP_179972966.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_956     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 966861..977931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0514_RS04945 (STHERMO_1122) glgP 968068..970332 (+) 2265 WP_179972968.1 glycogen/starch/alpha-glucan family phosphorylase -
  H0514_RS04950 (STHERMO_1123) - 970645..971634 (+) 990 WP_179972967.1 lipoate--protein ligase -
  H0514_RS04955 (STHERMO_1125) xerS 971861..972931 (+) 1071 WP_179972966.1 tyrosine recombinase XerS Machinery gene
  H0514_RS04960 (STHERMO_1126) - 973093..975633 (-) 2541 WP_179972965.1 M1 family metallopeptidase -
  H0514_RS04965 (STHERMO_1127) phoU 975767..976420 (-) 654 WP_179973005.1 phosphate signaling complex protein PhoU -
  H0514_RS04970 (STHERMO_1128) pstB 976448..977206 (-) 759 WP_179973351.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41579.70 Da        Isoelectric Point: 9.6822

>NTDB_id=1009971 H0514_RS04955 WP_179972966.1 971861..972931(+) (xerS) [Streptococcus thermophilus isolate STH_CIRM_956]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFNWLIDTGISDADDITSVHIKTLENLTKKDME
SFVFYLRERPSLNTYSKKQGVSQITINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKISTKKKKETLAARAENIKQK
LFLGDETMKFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLSSGVRLSEAVNLDLKDINLKMMVIDVTRKGGQRDS
VNVASFARPYLENYLSIRNKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1009971 H0514_RS04955 WP_179972966.1 971861..972931(+) (xerS) [Streptococcus thermophilus isolate STH_CIRM_956]
ATGAAACGTGAACTCTTACTAGAAAAAATTGAAGAATACAAATCTCTTATGCCTTGGTTTGTTTTGGAGTATTATCAATC
TAAACTATCTGTACCGTATTCTTTCACAACCTTATATGAATATCTCAAGGAATATAAACGCTTTTTTAACTGGTTAATTG
ACACAGGTATTTCAGATGCTGATGATATTACCTCAGTTCATATCAAAACCTTGGAGAATCTAACTAAAAAAGATATGGAA
TCTTTTGTCTTCTATCTACGTGAACGTCCATCTTTAAATACCTATTCAAAGAAACAGGGTGTCTCTCAAATAACCATTAA
TCGTACTCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGACCTGATGGTGAACCATATTTCT
ATCGTAATGTCATGAAAAAAATTTCGACTAAGAAAAAGAAAGAAACCTTGGCTGCACGTGCTGAGAATATCAAACAAAAA
CTTTTTCTAGGCGATGAAACCATGAAGTTCCTTGATTATGTAGAAAATGAATACGAAGTCAAGCTCTCAAATCGTGCTAA
ATCTTCGTTTTATAAGAATAAAGAGCGTGATTTAGCTATCATTGCCCTACTGCTGTCTTCAGGCGTTCGACTCTCTGAGG
CTGTAAATCTGGACCTTAAAGATATCAATTTAAAAATGATGGTTATTGACGTTACTCGAAAAGGTGGTCAACGGGACTCG
GTTAATGTGGCAAGTTTTGCAAGACCCTATCTTGAAAACTATCTTAGCATACGTAATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCTCTATTTTTAACAGAATATCGAGGCGTTCCCAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGCTA
AGTATTCTCAGGATTTCAAGATTCGTGTCACTCCCCACAAATTACGTCATACTTTGGCAACACGTCTTTATGATGCTACT
AAGTCTCAAGTTTTAGTTAGTCATCAACTTGGTCATTCTTCCACTCAGGTCACTGATCTTTACACCCATATTGTAAATGA
TGAGCAAAAAAATGCTCTAGATAATTTATGA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(182-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

81.461

100

0.815

Multiple sequence alignment