Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   H0514_RS00215 Genome accession   NZ_LR822020
Coordinates   30384..31157 (+) Length   257 a.a.
NCBI ID   WP_179972467.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_956     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 25384..36157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0514_RS00195 (STHERMO_0029) - 25536..26936 (+) 1401 WP_179972466.1 CHAP domain-containing protein -
  H0514_RS00200 (STHERMO_0030) - 27150..28115 (+) 966 WP_011680585.1 ribose-phosphate diphosphokinase -
  H0514_RS00205 - 28164..29010 (-) 847 Protein_19 transposase -
  H0514_RS00210 (STHERMO_0033) - 29222..30397 (+) 1176 WP_011680586.1 pyridoxal phosphate-dependent aminotransferase -
  H0514_RS00215 (STHERMO_0034) recO 30384..31157 (+) 774 WP_179972467.1 DNA repair protein RecO Machinery gene
  H0514_RS00220 (STHERMO_0035) plsX 31373..32377 (+) 1005 WP_179972468.1 phosphate acyltransferase PlsX -
  H0514_RS00225 (STHERMO_0036) - 32377..32622 (+) 246 WP_002949008.1 phosphopantetheine-binding protein -
  H0514_RS00230 (STHERMO_0037) purC 32907..33614 (+) 708 WP_179972469.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29720.03 Da        Isoelectric Point: 5.4231

>NTDB_id=1009909 H0514_RS00215 WP_179972467.1 30384..31157(+) (recO) [Streptococcus thermophilus isolate STH_CIRM_956]
MQKLESRGVILFNRNYRENDKLVKIFTKQAGKRMFFVRGGGSGKLSAVIQPLNIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDAAIADGVVDAQLFAFLEKTLVLMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKLSGLLCPNHYEKDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDEMKRKLRQFIDELYDNYVGIHLKSKKFI
DNLNSWGHIMSKEDSAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1009909 H0514_RS00215 WP_179972467.1 30384..31157(+) (recO) [Streptococcus thermophilus isolate STH_CIRM_956]
ATGCAGAAGCTTGAGAGTAGGGGGGTTATCCTCTTCAATCGTAATTATCGTGAGAATGATAAGCTGGTTAAGATTTTTAC
TAAACAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTGAGTGCTGTGATTCAACCTTTAAACA
TCGCTGAATTTATGATGACTGTAAATGATGAAGGTTTATCTTTCATAGAGGATTATAGTCAGGCAGAGTCTTTTAAGGAA
ATTACAAGTGATATTTTTAAACTGTCTTACGCGACCTATTTAGCTGCCTTGACTGATGCTGCTATTGCTGACGGTGTGGT
AGATGCACAATTATTTGCATTTTTAGAGAAAACCCTTGTGTTAATGGAAGAGGGCTTAGATTATGAAATATTGACTAATA
TCTTTGAGATTCAAGTTTTGGACCGTTTTGGCGTACGATTGAATTTTCATGAATGTGTCTTTTGTCATCGTGTTGGTCTT
CCTTTTGATTTCTCGTATAAGTTATCAGGTTTACTTTGTCCCAATCATTACGAAAAAGATGAAAGGCGTAGTCATTTGGA
CCCTAATGTGCCTTATCTTTTGGATCGTTTCCAGGGTCTTTCGTTTGAAGAATTGAGAAGCATATCTGTTAAGGATGAAA
TGAAACGAAAGTTGAGACAATTTATTGATGAGCTTTATGATAATTATGTTGGGATTCATCTTAAAAGCAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAGTAAAGAAGATAGTGCTGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

61.265

98.444

0.603

Multiple sequence alignment