Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   H0510_RS06120 Genome accession   NZ_LR822019
Coordinates   1164105..1164785 (-) Length   226 a.a.
NCBI ID   WP_003094822.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_772     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1159105..1169785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0510_RS06090 (STHERMO_1339) - 1159313..1159762 (-) 450 WP_179966699.1 cytidine deaminase family protein -
  H0510_RS06095 (STHERMO_1340) - 1159773..1159952 (-) 180 Protein_1160 ABC transporter permease -
  H0510_RS06100 (STHERMO_1341) - 1159954..1160151 (-) 198 Protein_1161 YkgJ family cysteine cluster protein -
  H0510_RS06105 (STHERMO_1342) - 1160236..1162236 (-) 2001 WP_179966700.1 ABC transporter permease -
  H0510_RS06110 (STHERMO_1343) - 1162238..1162996 (-) 759 WP_179966701.1 ABC transporter ATP-binding protein -
  H0510_RS06115 (STHERMO_1344) - 1163141..1164115 (-) 975 WP_022097083.1 sensor histidine kinase -
  H0510_RS06120 (STHERMO_1345) braR 1164105..1164785 (-) 681 WP_003094822.1 response regulator transcription factor Regulator
  H0510_RS06125 (STHERMO_1346) - 1165236..1165816 (+) 581 Protein_1166 xanthine phosphoribosyltransferase -
  H0510_RS06130 (STHERMO_1347) - 1165816..1167083 (+) 1268 Protein_1167 nucleobase:cation symporter-2 family protein -
  H0510_RS06135 (STHERMO_1348) - 1167211..1168560 (+) 1350 WP_179966702.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26122.50 Da        Isoelectric Point: 5.0092

>NTDB_id=1009863 H0510_RS06120 WP_003094822.1 1164105..1164785(-) (braR) [Streptococcus thermophilus isolate STH_CIRM_772]
MHKILLVEDDEVIRQQVKKMLEQWGYEVVLVEDFMEVLSIFVKVEPHLVLMDIGLPLFNGYHWCQEIRKVSKVPIMFLSS
RDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQSLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQIL
QVLFERSGNIVSREDLMKELWNSDFFIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGYGLRHDG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=1009863 H0510_RS06120 WP_003094822.1 1164105..1164785(-) (braR) [Streptococcus thermophilus isolate STH_CIRM_772]
ATGCATAAGATTTTATTAGTTGAGGACGACGAGGTTATCCGTCAACAAGTCAAAAAAATGCTAGAACAGTGGGGTTACGA
AGTTGTTCTTGTTGAAGATTTCATGGAAGTATTATCTATTTTTGTAAAAGTAGAGCCCCACTTGGTTCTTATGGACATTG
GTTTACCTCTATTTAATGGTTATCATTGGTGTCAGGAAATTCGTAAGGTCTCCAAGGTGCCTATTATGTTCTTGTCTTCC
AGAGATCAGGCCATGGATATCGTTATGGCAATCAATATGGGTGGGGACGACTTTGTGACTAAACCCTTTGACCAAAATGT
TCTCTTGGCAAAAATTCAAGGGCTTTTGCGCCGATCTTATGAGTTTGGAAAGGATCAGAGTCTTTTGGAATATATGGGTG
TGATTCTGAACCTTAAGGCCATGGATCTGGTTTATCAGGGAGAAGTCGTTTCTTTGACTAAGAATGAATTTCAGATTTTA
CAAGTTCTCTTCGAGCGTTCTGGTAATATCGTTAGTCGTGAAGACCTCATGAAGGAGCTTTGGAATAGTGACTTCTTTAT
TGATGATAACACTCTCTCTGTAAATGTGGCACGTTTACGTAAGAAGTTAGAGGCAGTTGGTTTGAAGGACTTTATTGAAA
CCAAGAAAGGTGTCGGTTACGGGTTGCGTCATGATGGATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-221)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

52.294

96.46

0.504

Multiple sequence alignment