Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   H0510_RS03120 Genome accession   NZ_LR822019
Coordinates   576361..576957 (+) Length   198 a.a.
NCBI ID   WP_011225694.1    Uniprot ID   P96053
Organism   Streptococcus thermophilus isolate STH_CIRM_772     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 571361..581957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0510_RS03095 (STHERMO_0652) - 571497..571709 (+) 213 WP_011680924.1 alpha/beta fold hydrolase -
  H0510_RS03100 (STHERMO_0654) - 571957..572148 (+) 192 WP_002950214.1 alpha/beta fold hydrolase -
  H0510_RS03105 (STHERMO_0655) - 572321..573175 (+) 855 WP_179966977.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  H0510_RS03110 (STHERMO_0656) - 573179..574015 (+) 837 WP_179966978.1 NAD(P)H-hydrate dehydratase -
  H0510_RS03115 (STHERMO_0657) pbp2b 574137..576251 (+) 2115 WP_179966979.1 penicillin-binding protein PBP2B -
  H0510_RS03120 (STHERMO_0658) recR 576361..576957 (+) 597 WP_011225694.1 recombination mediator RecR Machinery gene
  H0510_RS09455 - 577098..577894 (+) 797 Protein_558 PRD domain-containing protein -
  H0510_RS03140 (STHERMO_0662) ybeY 578114..578611 (+) 498 WP_002950224.1 rRNA maturation RNase YbeY -
  H0510_RS03145 (STHERMO_0663) - 578592..578996 (+) 405 WP_011227008.1 diacylglycerol kinase family protein -
  H0510_RS03150 (STHERMO_0664) era 579015..579914 (+) 900 WP_002950226.1 GTPase Era -
  H0510_RS03155 (STHERMO_0665) mutM 579962..580783 (+) 822 WP_011225698.1 DNA-formamidopyrimidine glycosylase -
  H0510_RS03160 (STHERMO_0666) coaE 580780..581373 (+) 594 WP_141326384.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21767.98 Da        Isoelectric Point: 4.5326

>NTDB_id=1009844 H0510_RS03120 WP_011225694.1 576361..576957(+) (recR) [Streptococcus thermophilus isolate STH_CIRM_772]
MLYPTPIAKLIDSFSKLPGIGAKTATRLAFYTISMSDEDVNDFAKNLLAAKRELTYCSVCGRLTDDDPCIICTDETRDRT
KILVVEDSKDVSAMEKIQEYRGLYHVLQGLISPMNGVGPDDINLKSLITRLMDSEVDEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1009844 H0510_RS03120 WP_011225694.1 576361..576957(+) (recR) [Streptococcus thermophilus isolate STH_CIRM_772]
ATGCTTTATCCTACTCCAATTGCTAAACTGATTGATAGTTTTTCAAAACTTCCAGGAATTGGGGCTAAGACGGCGACACG
TCTGGCTTTCTATACCATTAGCATGTCTGATGAAGATGTCAATGATTTTGCAAAAAATCTTTTAGCAGCAAAACGTGAGT
TGACCTATTGTTCAGTTTGTGGTCGCTTGACTGATGATGACCCATGTATTATTTGTACGGATGAAACTAGAGACCGTACT
AAGATTTTGGTTGTTGAGGACTCCAAAGATGTTTCTGCTATGGAAAAGATTCAGGAATATCGTGGTCTCTACCATGTGCT
TCAAGGGCTTATCTCCCCTATGAATGGTGTTGGACCAGATGATATTAATTTAAAAAGTTTGATTACCCGTCTTATGGATA
GCGAGGTTGACGAGGTCATCATCGCAACTAATGCAACGGCCGATGGTGAGGCAACCTCTATGTATATTTCACGGGTCCTC
AAACCTGCAGGTATTAAGGTGACCCGCCTAGCGCGTGGGCTGGCTGTTGGTTCTGACATCGAGTACGCTGATGAAGTAAC
CTTGCTAAGAGCCATCGAGAATCGAACAGAACTGTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P96053

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.869

100

0.869
  recR Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475

Multiple sequence alignment