Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ABFV67_RS11150 Genome accession   NZ_CP158116
Coordinates   2432504..2433022 (-) Length   172 a.a.
NCBI ID   WP_186460310.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain IS021     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2427504..2438022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV67_RS11130 (ABFV67_11130) rpsP 2427966..2428214 (-) 249 WP_004395977.1 30S ribosomal protein S16 -
  ABFV67_RS11135 (ABFV67_11135) ffh 2428452..2429822 (-) 1371 WP_004395978.1 signal recognition particle protein -
  ABFV67_RS11140 (ABFV67_11140) - 2430035..2430829 (+) 795 WP_154169131.1 inner membrane protein YpjD -
  ABFV67_RS11145 (ABFV67_11145) - 2431137..2432411 (+) 1275 WP_154169133.1 CNNM domain-containing protein -
  ABFV67_RS11150 (ABFV67_11150) luxS 2432504..2433022 (-) 519 WP_186460310.1 S-ribosylhomocysteine lyase Regulator
  ABFV67_RS11155 (ABFV67_11155) gshA 2433139..2434707 (-) 1569 WP_342639063.1 glutamate--cysteine ligase -
  ABFV67_RS11160 (ABFV67_11160) - 2434978..2437830 (-) 2853 WP_342639064.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18984.75 Da        Isoelectric Point: 4.9229

>NTDB_id=1009829 ABFV67_RS11150 WP_186460310.1 2432504..2433022(-) (luxS) [Vibrio metschnikovii strain IS021]
MPLLDSFTVDHTRMQAPAVRVAKTMQTPKGDTITVFDLRFTLPNQAILSEKGIHTLEHLYAGFMRNHLNSEQVEIIDISP
MGCRTGFYMSLIGAPTEQQVATAWLAAMEDVLKVQDQKDIPELNEYQCGTAAMHSLSEAQAIAQQVLSSGIGVNKNDQLA
LPESMLKNLQVN

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1009829 ABFV67_RS11150 WP_186460310.1 2432504..2433022(-) (luxS) [Vibrio metschnikovii strain IS021]
ATGCCACTACTAGATAGCTTTACGGTTGATCATACTCGCATGCAAGCTCCCGCTGTACGGGTAGCGAAAACCATGCAAAC
CCCGAAAGGCGATACGATTACTGTATTTGACCTGCGTTTTACTCTGCCTAACCAAGCTATTTTGTCTGAAAAAGGAATTC
ATACTCTAGAGCACCTTTATGCAGGGTTCATGCGTAATCATCTTAATAGCGAACAGGTGGAAATTATTGATATTTCCCCA
ATGGGCTGCCGTACTGGATTTTATATGAGTTTGATTGGTGCACCTACCGAGCAGCAAGTAGCTACGGCGTGGTTAGCCGC
GATGGAAGATGTCTTGAAAGTGCAAGACCAAAAGGATATTCCAGAACTTAATGAGTACCAGTGCGGTACCGCAGCGATGC
ACTCTTTATCGGAAGCACAAGCGATTGCTCAGCAAGTATTAAGTAGCGGTATTGGAGTGAACAAAAATGATCAACTTGCT
TTACCTGAATCGATGCTAAAAAACCTACAAGTGAATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

84.302

100

0.843

Multiple sequence alignment