Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ABFV67_RS07930 Genome accession   NZ_CP158116
Coordinates   1702398..1703840 (+) Length   480 a.a.
NCBI ID   WP_161426336.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain IS021     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1697398..1708840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV67_RS07905 (ABFV67_07905) - 1697406..1698164 (-) 759 WP_154168365.1 SDR family oxidoreductase -
  ABFV67_RS07910 (ABFV67_07910) alsS 1698161..1699867 (-) 1707 WP_158138371.1 acetolactate synthase AlsS -
  ABFV67_RS07915 (ABFV67_07915) budA 1699900..1700685 (-) 786 WP_332396970.1 acetolactate decarboxylase -
  ABFV67_RS07920 (ABFV67_07920) - 1700794..1701681 (+) 888 WP_158138370.1 LysR family transcriptional regulator -
  ABFV67_RS07925 (ABFV67_07925) - 1701737..1702123 (+) 387 WP_158143956.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  ABFV67_RS07930 (ABFV67_07930) sbcB 1702398..1703840 (+) 1443 WP_161426336.1 exodeoxyribonuclease I Machinery gene
  ABFV67_RS07935 (ABFV67_07935) - 1703873..1704259 (+) 387 WP_115152724.1 CidA/LrgA family protein -
  ABFV67_RS07940 (ABFV67_07940) - 1704259..1704936 (+) 678 WP_332396952.1 CidB/LrgB family autolysis modulator -
  ABFV67_RS07945 (ABFV67_07945) cdd 1705100..1705987 (+) 888 WP_332396951.1 cytidine deaminase -
  ABFV67_RS07950 (ABFV67_07950) - 1706021..1708714 (-) 2694 WP_332396950.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 54723.06 Da        Isoelectric Point: 5.9164

>NTDB_id=1009821 ABFV67_RS07930 WP_161426336.1 1702398..1703840(+) (sbcB) [Vibrio metschnikovii strain IS021]
MKNSRPHNADHQPTFFFLDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPSDYLPSPEAALITGITPQKAMA
EGLPEPEFIARIHAELATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQQGNSRWDLLDVMRACHALRPEGIEWPE
NQEGFTSFKLEHLSKANGIEHSNAHDAMADVIATIELAKKIKAAQPKLFDYFLSMRHKRKLIDLVDIVNMTPLMHVSGML
GRERSYTSWVVPIAWHPTNQNAVIVVDLAKNPEPLFELTSEQLLQRLYTKHDDLAEGELPAPVKLIHLNKCPILAPAKTL
TAENAATIGINREQCLAHLSQIRQQPTLREKLVDVFSAERDFSASSDVDSQLYDGFFSPSDRAAMDIIRSAAPESLADLD
IQFSDQRIAPLLFRYRARHYPWTLNETEQRRWASHCQDYFATQLPSYMLNLENLVEQHQHDAKKIAILKAVYHYVEALAS

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=1009821 ABFV67_RS07930 WP_161426336.1 1702398..1703840(+) (sbcB) [Vibrio metschnikovii strain IS021]
TTGAAAAATTCCAGACCTCACAACGCAGATCATCAACCGACATTCTTCTTTTTAGATTATGAAACGTGGGGGACGAGCCC
AGCCAAAGATCGTCCCAGCCAGTTTGCTGGTGTGCGTACCGATATGGACTTTAATATCATTGGCGAGCCGCTGGTCATCT
ATTGTCAACTGCCTAGCGACTATTTGCCCTCACCAGAAGCCGCTTTGATAACGGGTATTACGCCACAAAAAGCGATGGCA
GAAGGGTTGCCAGAACCAGAATTTATTGCCCGCATTCATGCTGAACTGGCCACACCGAATACCACCAGTTTAGGCTATAA
CAGCATTCGTTTTGATGATGAAGTAACTCGCTATACCTGTTATCGGAATTTTATTGACCCCTACGCTTGGAGTTGGCAAC
AAGGCAACTCACGCTGGGATTTACTTGATGTGATGCGTGCTTGCCATGCTTTGCGCCCAGAAGGTATTGAATGGCCTGAA
AACCAAGAAGGCTTTACCAGTTTTAAACTGGAGCACCTTTCTAAAGCCAATGGTATAGAACACAGCAATGCTCACGATGC
GATGGCTGATGTGATTGCCACCATTGAGCTCGCAAAAAAAATCAAAGCAGCACAGCCTAAGCTGTTTGATTATTTCTTAT
CGATGCGCCATAAGCGTAAGCTGATTGATTTGGTTGATATTGTTAACATGACGCCATTAATGCATGTCTCTGGCATGCTA
GGACGTGAGCGCAGTTACACCAGTTGGGTTGTACCTATTGCTTGGCACCCCACCAATCAAAATGCCGTAATCGTGGTCGA
TTTGGCGAAAAATCCCGAGCCGTTATTCGAGTTAACCAGCGAGCAACTCTTACAGCGCCTCTATACTAAACATGATGACT
TGGCAGAGGGTGAGCTACCTGCGCCAGTTAAGTTGATTCATTTGAATAAGTGCCCCATTTTAGCCCCAGCGAAAACCCTT
ACCGCTGAAAATGCCGCCACCATAGGTATTAACCGCGAGCAGTGCTTGGCTCATCTTTCGCAAATTCGTCAACAACCAAC
ATTGCGTGAAAAGTTAGTGGATGTGTTTAGTGCTGAACGTGATTTTTCAGCCAGCAGTGATGTCGATAGCCAACTCTATG
ATGGGTTCTTTTCTCCTTCCGATCGCGCTGCAATGGACATTATTCGCTCTGCGGCGCCGGAGTCGCTCGCTGATTTAGAT
ATTCAATTCAGTGATCAACGCATTGCACCCCTGCTGTTTCGTTATCGAGCTCGTCATTATCCTTGGACACTCAATGAAAC
AGAACAGCGCCGCTGGGCAAGCCATTGTCAAGATTACTTTGCTACTCAGTTACCAAGTTATATGCTCAACTTAGAAAATT
TGGTCGAGCAACATCAACACGATGCTAAAAAAATCGCCATACTGAAAGCGGTGTATCATTATGTTGAAGCGCTGGCTTCT
TAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(17-197)

Exonuclease C-terminal (Exonuc_X-T_C)

(216-476)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

81.277

97.917

0.796

Multiple sequence alignment