Detailed information NTG1009816

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: ABFV67_RS02555
• Genome accession: NZ_CP158116
• Coordinates: 548501..551839 (-)
• Length: 1112 a.a.
• NCBI ID: WP_332395790.1
• Uniprot ID: -
• Organism: Vibrio metschnikovii strain IS021
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 543501..556839

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABFV67_RS02540 (ABFV67_02540)	-	543847..544872 (-)	1026	WP_154170222.1	ABC transporter permease	-
ABFV67_RS02545 (ABFV67_02545)	-	544875..545861 (-)	987	WP_350006946.1	ABC transporter permease	-
ABFV67_RS02550 (ABFV67_02550)	-	546082..547752 (-)	1671	WP_004394189.1	ABC transporter substrate-binding protein	-
ABFV67_RS02555 (ABFV67_02555)	chiS	548501..551839 (-)	3339	WP_332395790.1	response regulator	Regulator
ABFV67_RS02560 (ABFV67_02560)	rsmC	552095..553117 (-)	1023	WP_170906287.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
ABFV67_RS02565 (ABFV67_02565)	-	553183..554268 (-)	1086	WP_158138856.1	AI-2E family transporter	-
ABFV67_RS02570 (ABFV67_02570)	hemL	554695..555987 (-)	1293	WP_350006947.1	glutamate-1-semialdehyde 2,1-aminomutase	-

Sequence

Protein

• Length: 1112 a.a.
• Molecular weight: 125783.16 Da
• Isoelectric Point: 6.4892

>NTDB_id=1009816 ABFV67_RS02555 WP_332395790.1 548501..551839(-) (chiS) [Vibrio metschnikovii strain IS021]
MLAFLAVSLTPLTVTALFFLHSHSKDLQEQSTSHLISVRDTKQQQIIDYLSAKESEVMGFVRSELAYASGGRFYGLVNAF
QRLGENIEQARLHAQQRYIPGSGDQIRTSILPKSSSYAGSERYRLLHKRYHASYLELLKRSDFDDILIVDLQGNVVYSIF
KHAYYGTNLLSDNPQNSPLGRTFQQLEQQVTEQRKVNEDYTPVIVSDFAEYNGRQYAWMGAPIIQQGYLHSYAMFRLPNN
GITKLIADHNQDSAKRTLLVGQDHRSRTLAYQQADVDTSSEVIQLALNGSRSVTTYENTLGEKQIAAYAPIHLQNLNWAL
VVELPEKEAFARVRQLEKLFIFAMLTAIILVVIASHYLSNFITLPLLKLTWAAERVSAGDLDQPIIHTQRRDEIGRLAVS
FERMQRSIREKIQLIKSQNIELEDNIQLIRKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALTSGANGPISAAH
RYQLDIIISSGQRLANLVDDLLDYHKMRYGHLDIETQAVNLSNATRMVLELSHHLLGKKTLRIINQIADQPLWVSADAQR
LEQVLYNLIGNAIKYTSEGKIVISATPMEHQVRVQVVDTGQGIPAEQLEHIFEPLIQAGHDSSRYRQGAGLGLTISRQLI
ELMQGSLYVSSQPMVGTTFSFTLPLATSQQIAQAQRSQIAHFQAPELSSIDDLTQPQQPENPQGPLLLIADDEPVNLRVL
DSFLRLEGYRVRTALDGHEVIEAIAKEKPELLLLDVMMPGMSGYQVCEQLREQYDHAQLPIIMLTALTQSDDRIRGFAAG
ANDYLSKPFNKQELAARIKAHLSASKAEQRRIENAQLQKELKQRAMVEASLLETQGRLLEQLDSAPEAILCLREDNKIRF
ANEAACKLFKRSQDQLKRSNAEELIAPKYLLVEQEHYCGNIDIYIDDVRQHLSADVLRLPEGSSFKTMYIFNVGGNLNAN
RIHQLETAVDALSSYAFAGDKDKLQQLKELGGEFTRIAEKVAGETPSKQALMRAVLVDAMTSALDYWEKVTGQSKFAFAE
QSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLNSLDYILEHCQEQGPERTYIEVQRDKLQQLLTSD

Nucleotide

• Length: 3339 bp

>NTDB_id=1009816 ABFV67_RS02555 WP_332395790.1 548501..551839(-) (chiS) [Vibrio metschnikovii strain IS021]
ATGTTAGCGTTTCTGGCAGTCAGCCTCACTCCGCTAACGGTAACAGCCTTGTTCTTTCTTCATTCACACAGTAAAGACTT
ACAAGAACAAAGTACCTCACATCTCATTTCTGTACGAGATACCAAGCAGCAACAAATTATCGATTATCTCAGCGCCAAAG
AGTCTGAAGTGATGGGATTTGTTCGTTCAGAACTTGCCTATGCCAGCGGTGGACGTTTTTACGGTTTGGTTAATGCCTTT
CAACGATTAGGGGAAAATATTGAGCAAGCGCGTCTGCACGCTCAACAACGCTATATCCCCGGTTCTGGCGATCAAATCAG
AACCTCTATTTTACCTAAATCAAGTAGTTACGCAGGTAGTGAACGTTATCGTCTACTGCACAAACGTTACCATGCAAGTT
ATCTAGAGCTACTGAAACGGTCTGACTTTGACGATATTCTGATCGTCGATCTACAGGGTAATGTGGTCTATTCAATTTTC
AAGCATGCGTATTATGGCACGAATCTACTCAGCGATAATCCGCAGAACTCACCTCTCGGACGAACCTTCCAACAACTGGA
ACAGCAAGTGACTGAGCAACGTAAGGTCAATGAAGACTATACCCCTGTCATTGTGTCTGATTTTGCTGAATACAATGGAC
GCCAATATGCTTGGATGGGCGCACCCATTATTCAACAAGGCTATCTTCACAGTTATGCCATGTTCCGTCTGCCGAATAAT
GGCATCACCAAATTAATTGCCGATCATAATCAAGACTCAGCTAAAAGGACATTATTGGTTGGCCAAGATCACCGTTCTCG
TACGCTGGCTTATCAACAAGCCGATGTGGATACCAGCAGTGAAGTGATTCAGTTGGCACTCAATGGCTCGCGCTCGGTCA
CAACCTATGAGAATACTCTCGGTGAAAAACAGATTGCCGCTTATGCGCCGATTCATTTGCAAAATCTCAATTGGGCTTTG
GTTGTCGAACTCCCAGAAAAAGAAGCCTTTGCCCGAGTAAGACAACTGGAAAAATTATTTATTTTCGCGATGTTAACGGC
GATCATCTTAGTAGTCATCGCTTCTCACTATCTCTCTAACTTTATTACTCTCCCTTTACTCAAACTCACTTGGGCAGCAG
AACGCGTCTCCGCCGGTGATTTGGATCAACCGATCATTCATACTCAACGGCGTGATGAAATTGGCCGTTTGGCGGTTAGT
TTTGAAAGAATGCAACGCTCGATCCGTGAAAAAATCCAACTGATCAAATCACAAAATATTGAGTTAGAAGATAATATCCA
GCTGATTCGTAAACAAAATGATGAACTGCAATTAGCCAACAAACTTAAAGATGAGTTTTTAGCGACCACATCACATGAGC
TACGTACTCCATTACACGGCATGATAGGCATTGCCGAAGCTTTGACTTCCGGTGCTAATGGGCCAATCAGCGCAGCCCAC
CGCTATCAACTCGACATTATTATCAGTAGCGGTCAACGTCTTGCCAATCTTGTTGATGATTTACTCGATTATCACAAGAT
GCGTTATGGTCATCTCGATATCGAAACTCAAGCCGTTAATCTCTCCAATGCGACCAGAATGGTACTTGAGCTGTCTCACC
ATTTACTGGGTAAAAAAACGCTACGAATTATTAACCAAATTGCCGATCAGCCATTATGGGTATCGGCTGATGCTCAGCGA
CTTGAACAGGTACTGTATAACCTGATTGGTAATGCGATTAAATATACCTCTGAAGGAAAAATTGTTATTTCAGCTACCCC
AATGGAGCATCAAGTTAGAGTCCAAGTGGTCGATACTGGACAAGGCATTCCTGCTGAGCAATTAGAGCATATTTTTGAAC
CGCTCATTCAAGCCGGGCACGATAGCAGTCGTTATCGTCAAGGTGCGGGTTTAGGATTGACGATTAGCCGCCAATTAATT
GAATTAATGCAAGGCTCCTTGTACGTCAGTAGCCAGCCGATGGTCGGCACAACCTTTAGTTTTACGCTGCCACTCGCGAC
TTCACAACAAATTGCTCAAGCGCAGCGCAGTCAAATTGCTCATTTTCAAGCACCGGAATTATCCTCGATTGACGATCTCA
CTCAACCGCAACAACCAGAAAACCCACAAGGTCCTCTACTGCTGATTGCCGATGATGAGCCGGTTAACCTGCGTGTATTA
GACAGTTTTTTACGTCTAGAGGGCTATCGTGTCCGAACAGCACTTGATGGCCATGAGGTTATTGAAGCAATTGCCAAAGA
GAAACCTGAACTGTTACTGCTCGATGTGATGATGCCCGGCATGAGTGGTTATCAGGTCTGTGAGCAATTAAGAGAGCAGT
ACGATCATGCGCAACTACCTATTATAATGCTAACCGCATTAACCCAAAGTGATGATCGGATCAGAGGCTTTGCCGCTGGC
GCCAATGACTATTTATCAAAACCTTTTAATAAACAAGAACTCGCCGCTCGAATTAAAGCTCACTTAAGCGCCAGTAAAGC
AGAGCAACGCCGTATTGAAAATGCTCAACTTCAAAAAGAGCTCAAACAACGAGCGATGGTCGAAGCCAGTTTACTCGAAA
CTCAAGGCCGACTATTAGAGCAACTGGATTCAGCGCCAGAAGCGATTTTGTGTTTACGAGAAGACAATAAAATCCGCTTT
GCCAATGAGGCGGCCTGTAAGCTATTTAAACGCAGCCAAGATCAACTCAAACGCTCTAACGCCGAAGAGTTGATTGCCCC
TAAATATTTACTGGTTGAGCAAGAGCATTATTGCGGGAACATCGATATTTATATCGATGATGTCAGACAACACCTCTCCG
CTGATGTGCTTCGCTTACCGGAAGGAAGCAGTTTTAAAACGATGTACATTTTTAATGTCGGTGGAAATCTTAACGCCAAT
CGTATCCATCAACTGGAAACCGCCGTCGACGCGTTATCAAGCTATGCTTTTGCTGGTGATAAAGACAAACTTCAGCAGTT
AAAAGAGCTAGGAGGTGAATTTACTCGCATCGCAGAAAAAGTGGCCGGAGAAACCCCATCAAAACAGGCGTTAATGCGCG
CCGTGTTGGTTGATGCGATGACGAGCGCTCTCGACTACTGGGAAAAAGTCACAGGACAAAGTAAGTTTGCTTTTGCTGAA
CAAAGTGGATTATGGCGCGTCTATTTAGATCGTAGTACTTTGCAAACTCGAACGTTGGATAAGTACTTACGTATTGAAAC
GCTACCCAAAACGCCTCGCTGGCGCACGGTGCTGAACTCACTTGACTACATATTGGAACACTGTCAGGAGCAAGGCCCAG
AGCGAACCTACATCGAAGTACAACGAGATAAATTACAGCAATTGTTAACGAGCGATTAA

Domains

Predicted by InterproScan.

• His Kinase A (phospho-acceptor) domain (HisKA) (443-508)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (557-666)

• PAS fold (PAS) (860-908)

• Response regulator receiver domain (Response_reg) (708-819)

• HAMP domain (HAMP) (358-410)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	80.306	100	0.803