Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   H0511_RS04865 Genome accession   NZ_LR822017
Coordinates   932322..933392 (-) Length   356 a.a.
NCBI ID   WP_179974512.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_336     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 927322..938392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0511_RS04850 (STHERMO_1066) pstB 928047..928805 (+) 759 WP_179974510.1 phosphate ABC transporter ATP-binding protein PstB -
  H0511_RS04855 (STHERMO_1067) phoU 928833..929486 (+) 654 WP_179974528.1 phosphate signaling complex protein PhoU -
  H0511_RS04860 (STHERMO_1068) - 929620..932160 (+) 2541 WP_179974511.1 M1 family metallopeptidase -
  H0511_RS04865 (STHERMO_1069) xerS 932322..933392 (-) 1071 WP_179974512.1 tyrosine recombinase XerS Machinery gene
  H0511_RS04870 (STHERMO_1071) - 933619..934608 (-) 990 WP_179974513.1 lipoate--protein ligase -
  H0511_RS04875 (STHERMO_1072) glgP 934920..937183 (-) 2264 Protein_920 glycogen/starch/alpha-glucan family phosphorylase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41507.64 Da        Isoelectric Point: 9.7411

>NTDB_id=1009748 H0511_RS04865 WP_179974512.1 932322..933392(-) (xerS) [Streptococcus thermophilus isolate STH_CIRM_336]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFNWLIDTGISDADDITSVHIKTLENLTKKDME
SFVFYLRERPSLNTYSKKQGVSQITINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKISTKKKKETLAARAENIKQK
LFLGDETMKFLDYVENGYEVKLSNRAKSSFYKNKERDLAIIALLLSSGVRLSEAVNLDLKDINLKMMVIDVTRKGGQRDS
VNVASFARPYLENYLSIRNKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1009748 H0511_RS04865 WP_179974512.1 932322..933392(-) (xerS) [Streptococcus thermophilus isolate STH_CIRM_336]
ATGAAACGTGAACTCTTACTAGAAAAAATTGAAGAATACAAATCTCTTATGCCTTGGTTTGTTTTGGAGTATTATCAATC
TAAACTATCTGTACCGTATTCTTTCACAACCTTATATGAATATCTCAAGGAATATAAACGCTTTTTTAACTGGTTAATTG
ACACAGGTATTTCAGATGCTGATGATATTACCTCAGTTCATATCAAAACCTTGGAGAATCTAACTAAAAAAGATATGGAA
TCTTTTGTCTTCTATCTACGTGAACGTCCATCTTTAAATACCTATTCAAAGAAACAGGGTGTCTCTCAAATAACCATTAA
TCGTACTCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGACCTGATGGTGAACCATATTTCT
ATCGTAATGTCATGAAAAAAATTTCGACTAAGAAAAAGAAAGAAACCTTGGCTGCACGTGCTGAGAATATCAAACAAAAA
CTTTTTCTAGGCGATGAAACCATGAAGTTCCTTGATTATGTAGAAAATGGATACGAAGTCAAGCTCTCAAATCGTGCTAA
ATCTTCGTTTTATAAGAATAAAGAGCGTGATTTAGCTATCATTGCCCTACTGCTGTCTTCAGGCGTTCGACTCTCTGAGG
CTGTGAATCTGGACCTTAAAGATATCAATTTAAAAATGATGGTTATTGACGTTACTCGAAAAGGTGGTCAACGGGACTCG
GTTAATGTGGCAAGTTTTGCAAGACCCTATCTTGAAAACTATCTTAGCATACGTAATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCTCTATTTTTAACAGAATATCGAGGCGTTCCCAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGCTA
AGTATTCTCAGGATTTCAAGATTCGTGTCACTCCCCACAAATTACGTCATACTTTGGCAACACGTCTTTATGATGCTACT
AAGTCTCAAGTTTTAGTTAGTCATCAACTTGGTCATTCTTCCACTCAGGTCACTGATCTTTACACCCATATTGTAAATGA
TGAGCAAAAAAATGCTCTAGATAATTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

81.18

100

0.812