Detailed information    

insolico Bioinformatically predicted

Overview

Name   letS   Type   Regulator
Locus tag   D934_RS13620 Genome accession   NZ_CP006696
Coordinates   1602933..1603097 (-) Length   54 a.a.
NCBI ID   WP_230577752.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. sandyi Ann-1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1597933..1608097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D934_RS07405 (D934_07945) metK 1598617..1599828 (+) 1212 WP_042836517.1 methionine adenosyltransferase -
  D934_RS07420 (D934_07960) - 1600201..1600773 (+) 573 WP_020851844.1 RNA pyrophosphohydrolase -
  D934_RS07425 (D934_07965) - 1600885..1601100 (+) 216 WP_024749091.1 bacterioferritin-associated ferredoxin -
  D934_RS07430 (D934_07970) bfr 1601182..1601646 (+) 465 WP_004083622.1 bacterioferritin -
  D934_RS13620 letS 1602933..1603097 (-) 165 WP_230577752.1 histidine kinase Regulator
  D934_RS07445 (D934_07980) - 1603890..1605590 (-) 1701 WP_020851839.1 EAL domain-containing protein -
  D934_RS07450 (D934_07985) - 1606552..1607229 (+) 678 WP_020851838.1 DUF6776 family protein -
  D934_RS07455 (D934_07990) - 1607231..1607668 (+) 438 WP_020851837.1 polymer-forming cytoskeletal protein -
  D934_RS07460 (D934_07995) erpA 1607703..1608089 (+) 387 WP_010892935.1 iron-sulfur cluster insertion protein ErpA -

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 5954.78 Da        Isoelectric Point: 4.6641

>NTDB_id=100971 D934_RS13620 WP_230577752.1 1602933..1603097(-) (letS) [Xylella fastidiosa subsp. sandyi Ann-1]
MCFEVHDTGICISSEQQIRLFSSFSQADTSTTRLYESTALGLAWLGLAWLGLAK

Nucleotide


Download         Length: 165 bp        

>NTDB_id=100971 D934_RS13620 WP_230577752.1 1602933..1603097(-) (letS) [Xylella fastidiosa subsp. sandyi Ann-1]
GTGTGTTTCGAAGTGCACGATACCGGTATCTGTATTTCTTCCGAACAGCAAATACGACTGTTCTCTTCGTTCAGCCAAGC
TGACACTTCAACCACACGCCTATACGAGAGCACAGCGCTTGGCTTGGCTTGGCTTGGCTTGGCTTGGCTTGGCTTGGCAA
AATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letS Legionella pneumophila strain ERS1305867

54.762

77.778

0.426

Multiple sequence alignment