Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   H0506_RS07515 Genome accession   NZ_LR822015
Coordinates   1450863..1451939 (-) Length   358 a.a.
NCBI ID   WP_179971649.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_65     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1445863..1456939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0506_RS07495 (STHERMO_1660) - 1446975..1449041 (-) 2067 WP_011226460.1 sodium:proton antiporter -
  H0506_RS07500 (STHERMO_1661) - 1449050..1449292 (-) 243 WP_011226461.1 hypothetical protein -
  H0506_RS07505 (STHERMO_1662) - 1449289..1449837 (-) 549 WP_011226462.1 class I SAM-dependent methyltransferase -
  H0506_RS07510 (STHERMO_1663) - 1449834..1450778 (-) 945 WP_011226463.1 TIGR01212 family radical SAM protein -
  H0506_RS07515 (STHERMO_1664) sepM 1450863..1451939 (-) 1077 WP_179971649.1 SepM family pheromone-processing serine protease Regulator
  H0506_RS07520 (STHERMO_1665) coaD 1451917..1452414 (-) 498 WP_011226465.1 pantetheine-phosphate adenylyltransferase -
  H0506_RS07525 (STHERMO_1666) rsmD 1452448..1453047 (-) 600 Protein_1424 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  H0506_RS07530 (STHERMO_1667) trxB 1453138..1454091 (-) 954 WP_255136104.1 thioredoxin-disulfide reductase -
  H0506_RS07535 (STHERMO_1668) - 1454124..1454348 (-) 225 WP_011226468.1 DUF4059 family protein -
  H0506_RS07540 (STHERMO_1669) amiE 1454563..1455306 (-) 744 WP_011226469.1 amino acid ABC transporter ATP-binding protein Regulator
  H0506_RS07545 (STHERMO_1670) - 1455306..1456052 (-) 747 WP_095559509.1 amino acid ABC transporter permease -

Sequence


Protein


Download         Length: 358 a.a.        Molecular weight: 39248.11 Da        Isoelectric Point: 9.4944

>NTDB_id=1009675 H0506_RS07515 WP_179971649.1 1450863..1451939(-) (sepM) [Streptococcus thermophilus isolate STH_CIRM_65]
MANKTKSKSLLEKMWRIKWWLLSIFTVLFLLFALFFPLNNYYVELPGGAFDTKEVLTVNKKADDSKGSYNFVAVAQTKAT
LALMLYTQFNDFAKLQTSEEATGNYSDEDFMRINQFYMETSQNQAVYQGLTLAGKEVSLEYMGVYVLQVADDSSFKGVLN
IADTVTAVNGKTFDNSTDMIKYVQGLKLGSKVKVTYMRDGKEKTATGKIIKIANGKNGIGIGLTDHTEIKSPENVKFKLD
GVGGPSAGLMFTLAIYDQVSGQDLKAGRKIAGTGTIEKDGAVGDIGGAYLKVKSAADSGADIFFVPNNLVTKEMKKADPD
AKTNYQEAKEAAEKLGTKMKIVPVKTAQEAIDYLKKTK

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=1009675 H0506_RS07515 WP_179971649.1 1450863..1451939(-) (sepM) [Streptococcus thermophilus isolate STH_CIRM_65]
GTGGCAAACAAGACAAAATCTAAATCGCTATTAGAGAAAATGTGGCGTATTAAGTGGTGGTTATTAAGTATTTTTACGGT
ACTTTTCCTCCTTTTTGCCCTCTTTTTCCCGCTCAATAATTACTATGTGGAGCTTCCGGGTGGTGCTTTTGATACCAAGG
AAGTCTTGACAGTGAATAAGAAAGCTGATGATTCTAAGGGCTCCTATAATTTTGTGGCGGTGGCTCAAACCAAGGCGACT
TTGGCCTTGATGCTCTATACTCAGTTTAATGATTTTGCAAAGCTTCAAACGTCTGAAGAGGCAACTGGAAATTACTCTGA
TGAAGATTTCATGCGCATCAACCAATTTTACATGGAGACTTCTCAAAACCAAGCGGTTTATCAGGGCTTGACTCTGGCTG
GTAAGGAGGTTAGTTTGGAGTATATGGGTGTCTATGTGCTTCAGGTTGCTGATGATTCTAGCTTCAAGGGTGTCCTCAAT
ATTGCTGATACGGTGACGGCTGTTAATGGTAAGACCTTTGATAATTCTACTGACATGATTAAATACGTTCAAGGACTTAA
GCTGGGTTCAAAGGTCAAGGTCACTTATATGAGAGATGGCAAAGAAAAGACTGCTACTGGTAAGATTATTAAGATTGCCA
ATGGCAAAAATGGTATTGGTATCGGCCTAACGGACCATACTGAGATCAAGAGTCCTGAGAATGTTAAGTTTAAACTGGAT
GGTGTCGGTGGGCCAAGTGCTGGTCTTATGTTTACCTTGGCTATTTACGATCAGGTGTCTGGTCAAGACCTCAAGGCTGG
CCGCAAGATTGCTGGTACAGGAACTATTGAAAAAGATGGGGCTGTCGGTGATATCGGTGGGGCCTATCTCAAGGTGAAAT
CTGCGGCTGATAGTGGCGCAGACATTTTCTTCGTGCCAAATAATCTAGTAACTAAGGAAATGAAAAAGGCTGATCCGGAT
GCCAAGACTAATTATCAAGAGGCCAAGGAAGCTGCTGAGAAACTGGGGACCAAGATGAAAATCGTCCCTGTTAAAACAGC
TCAAGAAGCCATTGATTATTTGAAAAAGACTAAATGA

Domains


Predicted by InterProScan.

(137-206)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

62.463

95.251

0.595


Multiple sequence alignment