Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QUE37_RS19000 Genome accession   NZ_AP027404
Coordinates   3666139..3666768 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC416 isolate EC416     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3661139..3671768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE37_RS18985 (MUTS2_36190) helD 3661381..3663435 (-) 2055 WP_001295354.1 DNA helicase IV -
  QUE37_RS18990 (MUTS2_36200) yccF 3663558..3664004 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QUE37_RS18995 (MUTS2_36210) yccS 3664014..3666176 (+) 2163 WP_000875061.1 YccS family putative transporter -
  QUE37_RS19000 (MUTS2_36220) sxy/tfoX 3666139..3666768 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QUE37_RS19005 (MUTS2_36230) sulA 3666987..3667496 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QUE37_RS19010 (MUTS2_36250) ompA 3667853..3668905 (+) 1053 WP_001307702.1 porin OmpA -
  QUE37_RS19015 (MUTS2_36260) matP 3668981..3669433 (-) 453 WP_000877162.1 macrodomain Ter protein MatP -
  QUE37_RS19020 (MUTS2_36270) ycbZ 3669619..3671379 (+) 1761 WP_089563792.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=100954 QUE37_RS19000 WP_000839153.1 3666139..3666768(-) (sxy/tfoX) [Escherichia coli strain EC416 isolate EC416]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=100954 QUE37_RS19000 WP_000839153.1 3666139..3666768(-) (sxy/tfoX) [Escherichia coli strain EC416 isolate EC416]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment