Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   H0502_RS08150 Genome accession   NZ_LR822013
Coordinates   1608764..1609537 (-) Length   257 a.a.
NCBI ID   WP_014607822.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_32     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1603764..1614537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0502_RS08135 (STHERMO_1839) purC 1606306..1607013 (-) 708 WP_011226729.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  H0502_RS08140 (STHERMO_1840) - 1607299..1607544 (-) 246 WP_002949008.1 phosphopantetheine-binding protein -
  H0502_RS08145 (STHERMO_1841) plsX 1607544..1608548 (-) 1005 WP_011680588.1 phosphate acyltransferase PlsX -
  H0502_RS08150 (STHERMO_1842) recO 1608764..1609537 (-) 774 WP_014607822.1 DNA repair protein RecO Machinery gene
  H0502_RS08155 (STHERMO_1843) - 1609524..1610699 (-) 1176 WP_014607821.1 pyridoxal phosphate-dependent aminotransferase -
  H0502_RS08160 - 1610912..1611757 (+) 846 Protein_1596 transposase -
  H0502_RS08165 (STHERMO_1846) - 1611806..1612771 (-) 966 WP_002948994.1 ribose-phosphate diphosphokinase -
  H0502_RS08170 (STHERMO_1847) - 1612985..1614466 (-) 1482 WP_014607819.1 CHAP domain-containing protein -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29803.03 Da        Isoelectric Point: 5.0766

>NTDB_id=1009482 H0502_RS08150 WP_014607822.1 1608764..1609537(-) (recO) [Streptococcus thermophilus isolate STH_CIRM_32]
MQKLESRGFILFNRNYRENDKLVKIFTKQAGKRMFFVRGGGSGKLSAVIQPLNIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDAAIADGVVDAQLFAFLEKTLVLMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYEEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDEMKRKLRQFIDELYDNYVGIHLKSKKFI
DNLNSWGHIMSKEDSAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1009482 H0502_RS08150 WP_014607822.1 1608764..1609537(-) (recO) [Streptococcus thermophilus isolate STH_CIRM_32]
ATGCAGAAGCTTGAGAGTAGGGGGTTTATCCTCTTCAATCGTAATTATCGTGAGAATGATAAGCTGGTTAAGATTTTTAC
TAAACAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTGAGTGCTGTGATTCAACCTTTAAACA
TCGCTGAATTTATGATGACTGTAAATGATGAAGGTTTATCTTTCATAGAGGATTATAGTCAGGCAGAGTCTTTTAAGGAA
ATTACAAGTGATATTTTTAAACTGTCTTACGCGACCTATTTAGCTGCCTTGACTGATGCTGCTATTGCTGACGGTGTGGT
AGATGCACAATTATTTGCATTTTTAGAGAAAACCCTTGTGTTAATGGAAGAGGGCTTAGATTATGAAATATTGACTAATA
TCTTTGAGATTCAAGTTTTGGACCGTTTTGGCGTACGATTGAATTTTCATGAATGTGTCTTTTGTCATCGTGTTGGTCTT
CCTTTTGATTTCTCGTATAAGTTCTCAGGTTTACTTTGTCCCAATCATTACGAAGAAGATGAAAGGCGTAGTCATTTGGA
CCCTAATGTGCCTTATCTTTTGGATCGTTTCCAGGGTCTTTCGTTTGAAGAATTGAGAAGCATATCTGTTAAGGATGAAA
TGAAACGAAAGTTGAGACAATTTATTGATGAGCTTTATGATAATTATGTTGGGATTCATCTTAAAAGCAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAGTAAAGAAGATAGTGCTGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

61.66

98.444

0.607