Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ABJ384_RS02205 Genome accession   NZ_CP157981
Coordinates   450145..451023 (+) Length   292 a.a.
NCBI ID   WP_349928627.1    Uniprot ID   A0AAU7SYH4
Organism   Acinetobacter sp. A1-4-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445145..456023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABJ384_RS02180 (ABJ384_02180) - 445412..446587 (+) 1176 WP_349928620.1 CsgG/HfaB family protein -
  ABJ384_RS02185 (ABJ384_02185) - 446674..447285 (+) 612 WP_200223215.1 hypothetical protein -
  ABJ384_RS02190 (ABJ384_02190) - 447681..448256 (-) 576 WP_086195739.1 xanthine phosphoribosyltransferase -
  ABJ384_RS02195 (ABJ384_02195) - 448348..449061 (-) 714 WP_349928623.1 DUF3108 domain-containing protein -
  ABJ384_RS02200 (ABJ384_02200) - 449225..449905 (-) 681 WP_349928625.1 hypothetical protein -
  ABJ384_RS02205 (ABJ384_02205) tonB2 450145..451023 (+) 879 WP_349928627.1 TonB family protein Machinery gene
  ABJ384_RS02210 (ABJ384_02210) - 451081..451479 (-) 399 WP_180082184.1 hypothetical protein -
  ABJ384_RS02215 (ABJ384_02215) ybeY 451594..452076 (-) 483 WP_180082183.1 rRNA maturation RNase YbeY -
  ABJ384_RS02220 (ABJ384_02220) - 452096..453172 (-) 1077 WP_086195734.1 PhoH family protein -
  ABJ384_RS02225 (ABJ384_02225) miaB 453212..454666 (-) 1455 WP_086195733.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 33148.90 Da        Isoelectric Point: 9.1584

>NTDB_id=1009469 ABJ384_RS02205 WP_349928627.1 450145..451023(+) (tonB2) [Acinetobacter sp. A1-4-2]
MLKKISFAPLMHAWWKDPIFTSAVIVAVALHLIILTLQFAMPQESDAAVKEIAVTLRPSEDKVEHADFLAQADQQGSGTF
REAHRMSSDMPAAMTEQTTGEQQQETLERLQQKRELSFEEKVLMTTLSWKKEAEQNQRKKATQELNSQFQAKAAMVASLE
AQYLQRQQNFSRQQKIKTVDGIQAKQDISAAYLEKFREKVEFYGNRYYPDAAKVQRLAGEVRLMVILNKSGGIRAIRLIE
SSGHGLLDEAAKTSVRKAAPFGGFDKGMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 879 bp        

>NTDB_id=1009469 ABJ384_RS02205 WP_349928627.1 450145..451023(+) (tonB2) [Acinetobacter sp. A1-4-2]
ATGCTTAAGAAAATCAGTTTCGCACCTTTAATGCATGCATGGTGGAAAGATCCAATTTTCACAAGTGCAGTGATTGTAGC
TGTTGCTTTGCATTTGATTATTTTGACTTTGCAGTTTGCCATGCCGCAAGAAAGTGATGCGGCAGTCAAAGAGATCGCCG
TCACATTACGTCCGAGTGAGGACAAGGTGGAACATGCGGATTTTTTGGCACAGGCAGATCAGCAAGGTTCTGGAACTTTT
CGTGAAGCACACCGTATGTCGAGCGATATGCCGGCAGCGATGACTGAGCAAACGACCGGTGAACAGCAACAGGAAACTCT
GGAGCGTTTACAACAGAAACGCGAACTCAGCTTTGAAGAAAAAGTGCTGATGACCACCTTAAGCTGGAAGAAAGAAGCAG
AACAGAACCAGCGCAAAAAAGCCACGCAGGAGCTGAATAGCCAGTTTCAGGCCAAGGCCGCGATGGTGGCAAGTCTGGAA
GCACAATATTTGCAACGTCAGCAAAATTTTAGTCGTCAGCAAAAAATTAAAACCGTAGATGGTATACAGGCCAAGCAGGA
TATTTCTGCCGCTTATTTGGAAAAATTCCGTGAGAAAGTAGAATTTTACGGTAACCGCTATTATCCCGATGCAGCCAAAG
TGCAACGCCTCGCAGGAGAGGTCCGTTTAATGGTCATCTTAAATAAAAGTGGCGGAATTCGTGCCATTCGTCTGATTGAA
AGTTCAGGTCATGGTTTACTGGATGAAGCGGCCAAGACTTCAGTACGTAAAGCTGCTCCATTCGGTGGTTTTGATAAAGG
GATGAAAGATATTTCCGAGCTTCGCATTGTGCGTACCTGGCGGTTTGACCCGGCTGAAGCTGAGTTTGAGGTGCATTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(205-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

71.864

100

0.726

Multiple sequence alignment