Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ABJ384_RS01130 Genome accession   NZ_CP157981
Coordinates   239647..239973 (+) Length   108 a.a.
NCBI ID   WP_086196446.1    Uniprot ID   -
Organism   Acinetobacter sp. A1-4-2     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 234647..244973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABJ384_RS01105 (ABJ384_01105) hemC 235322..236239 (+) 918 WP_349928389.1 hydroxymethylbilane synthase -
  ABJ384_RS01110 (ABJ384_01110) - 236241..237020 (+) 780 WP_349928391.1 uroporphyrinogen-III synthase -
  ABJ384_RS01115 (ABJ384_01115) - 237017..237859 (+) 843 WP_349928393.1 hypothetical protein -
  ABJ384_RS01120 (ABJ384_01120) - 237867..239060 (+) 1194 WP_349928395.1 heme biosynthesis protein HemY -
  ABJ384_RS01125 (ABJ384_01125) - 239072..239506 (+) 435 WP_086196447.1 thioesterase family protein -
  ABJ384_RS01130 (ABJ384_01130) hns 239647..239973 (+) 327 WP_086196446.1 H-NS histone family protein Regulator
  ABJ384_RS01135 (ABJ384_01135) gspN 240158..240901 (+) 744 WP_300044472.1 type II secretion system protein N -
  ABJ384_RS01140 (ABJ384_01140) - 240901..241743 (+) 843 WP_349928397.1 type II secretion system protein N -
  ABJ384_RS01145 (ABJ384_01145) gspD 241787..244051 (+) 2265 WP_349928399.1 type II secretion system secretin GspD -
  ABJ384_RS01150 (ABJ384_01150) - 244121..244804 (+) 684 WP_349928401.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12206.86 Da        Isoelectric Point: 5.2690

>NTDB_id=1009456 ABJ384_RS01130 WP_086196446.1 239647..239973(+) (hns) [Acinetobacter sp. A1-4-2]
MMPDISNLSVEELKRLQVEAEALIASKNDQAVEDAYQQILDIADNVGLSIEQILEFGATKRKKSTRKSVEPRYRSKKNSA
DTWTGRGKQPRWLVAELESGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1009456 ABJ384_RS01130 WP_086196446.1 239647..239973(+) (hns) [Acinetobacter sp. A1-4-2]
ATGATGCCTGACATTAGTAATTTATCTGTTGAAGAGTTAAAGCGTTTACAAGTTGAAGCTGAAGCATTAATTGCTTCTAA
AAATGATCAGGCAGTTGAAGATGCCTATCAGCAAATTTTAGACATTGCTGATAACGTTGGTTTAAGCATTGAACAAATTT
TAGAGTTTGGTGCAACCAAGCGTAAGAAAAGTACACGCAAATCTGTAGAACCACGTTATCGCAGCAAAAAGAATTCAGCA
GATACTTGGACTGGTCGCGGTAAACAACCGCGCTGGTTGGTTGCAGAACTTGAAAGTGGTGCAAAATTAGAAGATTTTCT
CATTTGA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

80.556

100

0.806

Multiple sequence alignment