Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   H0505_RS08520 Genome accession   NZ_LR822012
Coordinates   1652340..1652633 (-) Length   97 a.a.
NCBI ID   WP_082309154.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_30     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1647340..1657633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0505_RS08485 (STHERMO_1882) - 1647742..1648035 (-) 294 WP_232085688.1 hypothetical protein -
  H0505_RS09930 (STHERMO_1883) - 1648260..1648685 (-) 426 WP_111679733.1 CPBP family intramembrane glutamic endopeptidase -
  H0505_RS08495 (STHERMO_1885) - 1648928..1649125 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  H0505_RS08500 (STHERMO_1886) - 1649374..1650567 (-) 1194 WP_084831204.1 acetate kinase -
  H0505_RS08505 (STHERMO_1887) comGH 1650623..1651579 (-) 957 WP_084831205.1 class I SAM-dependent methyltransferase Machinery gene
  H0505_RS08510 (STHERMO_1888) comGG 1651624..1651941 (-) 318 WP_082309152.1 competence type IV pilus minor pilin ComGG Machinery gene
  H0505_RS08515 (STHERMO_1889) comGF 1651919..1652356 (-) 438 WP_082309153.1 competence type IV pilus minor pilin ComGF Machinery gene
  H0505_RS08520 (STHERMO_1890) comGE 1652340..1652633 (-) 294 WP_082309154.1 competence type IV pilus minor pilin ComGE Machinery gene
  H0505_RS08525 (STHERMO_1891) comGD 1652605..1653033 (-) 429 WP_253269448.1 competence type IV pilus minor pilin ComGD Machinery gene
  H0505_RS08530 (STHERMO_1892) comGC 1652993..1653319 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  H0505_RS08535 (STHERMO_1893) comGB 1653316..1654416 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  H0505_RS08540 (STHERMO_1894) comGA 1654298..1655239 (-) 942 WP_084829888.1 competence type IV pilus ATPase ComGA Machinery gene
  H0505_RS08545 (STHERMO_1895) - 1655320..1655682 (-) 363 WP_011226630.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10860.74 Da        Isoelectric Point: 10.4561

>NTDB_id=1009384 H0505_RS08520 WP_082309154.1 1652340..1652633(-) (comGE) [Streptococcus thermophilus isolate STH_CIRM_30]
MVNIKRRSLRGYILIESLVAMAVLVLVSSLILEQINTNRRLMSDNLHQQEVLSVATMAVQTKQDQLTLNGIAVTVKRSQQ
GITVYESGKEIIHVSKQ

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1009384 H0505_RS08520 WP_082309154.1 1652340..1652633(-) (comGE) [Streptococcus thermophilus isolate STH_CIRM_30]
GTGGTAAATATAAAAAGACGATCTCTTAGAGGTTATATTCTTATTGAAAGTCTGGTAGCTATGGCTGTTTTAGTACTTGT
CAGCAGTCTGATATTGGAACAAATTAATACCAACCGCAGACTAATGTCTGATAATCTCCATCAACAAGAGGTCTTGAGTG
TGGCAACAATGGCAGTTCAGACCAAGCAAGACCAGTTAACGCTGAATGGCATAGCGGTGACAGTTAAACGTAGCCAGCAA
GGTATCACGGTTTATGAATCGGGAAAGGAGATTATTCATGTATCTAAGCAGTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

42.268

100

0.423
  comGE Streptococcus mutans UA159

42.268

100

0.423