Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ABK447_RS20635 Genome accession   NZ_CP157943
Coordinates   4098360..4098650 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus sp. hwrm1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4093360..4103650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABK447_RS20620 (ABK447_20600) - 4093582..4094907 (-) 1326 WP_023356663.1 G5 and 3D domain-containing protein -
  ABK447_RS20625 (ABK447_20605) - 4095042..4095809 (-) 768 WP_015239022.1 TatD family hydrolase -
  ABK447_RS20630 (ABK447_20610) metG 4095885..4097876 (-) 1992 WP_011996169.1 methionine--tRNA ligase -
  ABK447_RS20635 (ABK447_20615) abrB 4098360..4098650 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  ABK447_RS20640 (ABK447_20620) rsmI 4098700..4099581 (-) 882 WP_038456672.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ABK447_RS20645 (ABK447_20625) - 4099556..4099855 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  ABK447_RS20650 (ABK447_20630) - 4099842..4100585 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ABK447_RS20655 (ABK447_20635) yabA 4100646..4101005 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  ABK447_RS20660 (ABK447_20640) ricT 4101020..4101847 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  ABK447_RS20665 (ABK447_20645) holB 4101850..4102839 (-) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  ABK447_RS20670 (ABK447_20650) - 4102851..4103291 (-) 441 WP_004264730.1 YaaR family protein -
  ABK447_RS20675 (ABK447_20655) darA 4103304..4103633 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=1009224 ABK447_RS20635 WP_169510469.1 4098360..4098650(+) (abrB) [Bacillus sp. hwrm1]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=1009224 ABK447_RS20635 WP_169510469.1 4098360..4098650(+) (abrB) [Bacillus sp. hwrm1]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment