Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ABK447_RS15250 Genome accession   NZ_CP157943
Coordinates   3055576..3056154 (-) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus sp. hwrm1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3050576..3061154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABK447_RS15215 (ABK447_15205) - 3050768..3052237 (+) 1470 WP_015239531.1 sodium:solute symporter -
  ABK447_RS15220 (ABK447_15210) - 3052279..3052596 (+) 318 WP_003155166.1 YbjQ family protein -
  ABK447_RS15225 (ABK447_15215) - 3052628..3052897 (-) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  ABK447_RS15230 (ABK447_15220) - 3053093..3053803 (+) 711 WP_100001352.1 YrpD family protein -
  ABK447_RS15235 (ABK447_15225) - 3054032..3054541 (-) 510 WP_012117237.1 MepB family protein -
  ABK447_RS15240 (ABK447_15230) - 3054664..3055035 (-) 372 WP_007409186.1 iron chaperone -
  ABK447_RS15245 (ABK447_15235) - 3055062..3055430 (-) 369 WP_012117235.1 iron chaperone -
  ABK447_RS15250 (ABK447_15240) comK 3055576..3056154 (-) 579 WP_003155179.1 competence protein ComK Regulator
  ABK447_RS15255 (ABK447_15245) - 3056470..3056703 (+) 234 WP_012117233.1 IDEAL domain-containing protein -
  ABK447_RS15260 (ABK447_15250) - 3056734..3057591 (-) 858 WP_221664047.1 SDR family oxidoreductase -
  ABK447_RS15265 (ABK447_15255) - 3057716..3059239 (+) 1524 WP_191974063.1 FAD-dependent oxidoreductase -
  ABK447_RS20940 - 3059471..3059845 (+) 375 Protein_3018 protoglobin domain-containing protein -
  ABK447_RS20945 - 3059855..3060652 (+) 798 WP_371265894.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=1009208 ABK447_RS15250 WP_003155179.1 3055576..3056154(-) (comK) [Bacillus sp. hwrm1]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1009208 ABK447_RS15250 WP_003155179.1 3055576..3056154(-) (comK) [Bacillus sp. hwrm1]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTATGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCTGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823

Multiple sequence alignment