Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   D934_RS02680 Genome accession   NZ_CP006696
Coordinates   648341..649003 (+) Length   220 a.a.
NCBI ID   WP_020851885.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. sandyi Ann-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 643341..654003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D934_RS02665 (D934_02860) - 643576..644817 (+) 1242 WP_020851882.1 lipoprotein-releasing ABC transporter permease subunit -
  D934_RS02670 (D934_02865) lolD 644810..645532 (+) 723 WP_020851883.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  D934_RS02675 (D934_02870) comA 645879..648356 (+) 2478 WP_020851884.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  D934_RS02680 (D934_02875) exbB 648341..649003 (+) 663 WP_020851885.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  D934_RS02685 (D934_02880) - 649008..649445 (+) 438 WP_004089267.1 biopolymer transporter ExbD -
  D934_RS02690 (D934_02885) msbA 649463..651211 (+) 1749 WP_020851886.1 lipid A export permease/ATP-binding protein MsbA -
  D934_RS02695 (D934_02890) lpxK 651208..652227 (+) 1020 WP_020851887.1 tetraacyldisaccharide 4'-kinase -
  D934_RS02700 (D934_02895) - 652636..653718 (-) 1083 WP_020850949.1 phage late control D family protein -
  D934_RS02705 (D934_02900) - 653709..653927 (-) 219 WP_020850950.1 tail protein X -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23970.38 Da        Isoelectric Point: 8.9727

>NTDB_id=100920 D934_RS02680 WP_020851885.1 648341..649003(+) (exbB) [Xylella fastidiosa subsp. sandyi Ann-1]
MLELVKAGGWPMLPLLMLGVVALAIVLERLWTLRRNEVLPSGLGREVREWVRRGKLDQNHLESLRRNSPLGALLAAALDV
KGGVREMIRERIEDTGRHLVHRMERFLNALGTIASAGPLLGLLGTVVGMIQMFLGILDYGVGDVNQLAGGIGKALVCTAT
GMIIAIPALIFHRYFKGRIAGYVIEMEQEAMLLLDAIDGLQIAIQGRNAEVAHPNAVTKD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=100920 D934_RS02680 WP_020851885.1 648341..649003(+) (exbB) [Xylella fastidiosa subsp. sandyi Ann-1]
ATGCTGGAACTGGTAAAGGCTGGCGGCTGGCCGATGTTGCCGCTGTTGATGTTAGGTGTTGTTGCATTGGCGATTGTGCT
TGAAAGGCTGTGGACTCTGCGTCGTAATGAGGTATTGCCGTCGGGTCTGGGTCGGGAGGTTCGTGAGTGGGTGAGGCGTG
GCAAATTGGACCAAAATCATCTTGAGTCTCTGCGCCGTAATTCTCCCCTTGGTGCGCTATTGGCCGCCGCTTTGGATGTA
AAAGGTGGCGTACGTGAAATGATTCGTGAACGTATTGAGGATACAGGACGCCATCTGGTGCATCGCATGGAGCGTTTTCT
GAATGCACTCGGTACGATTGCTTCTGCAGGTCCTTTACTTGGTTTGCTAGGTACTGTGGTCGGTATGATTCAAATGTTCC
TGGGGATTCTCGATTATGGCGTGGGCGATGTGAATCAGCTTGCTGGAGGGATTGGCAAGGCATTGGTTTGCACTGCTACA
GGTATGATTATTGCGATCCCCGCTCTGATTTTTCATCGTTATTTCAAGGGGCGAATTGCTGGCTACGTGATTGAGATGGA
GCAAGAGGCAATGCTCTTGCTGGATGCGATTGATGGTCTTCAGATTGCTATTCAAGGAAGAAATGCCGAAGTGGCGCACC
CCAATGCTGTCACCAAGGATTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

48.744

90.455

0.441