Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ABK447_RS13540 Genome accession   NZ_CP157943
Coordinates   2736987..2737451 (+) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus sp. hwrm1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2731987..2742451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABK447_RS13515 (ABK447_13505) - 2732495..2733041 (-) 547 Protein_2668 hypothetical protein -
  ABK447_RS13520 (ABK447_13510) fadH 2733155..2733919 (-) 765 WP_038463789.1 2,4-dienoyl-CoA reductase -
  ABK447_RS13525 (ABK447_13515) - 2734064..2734927 (+) 864 WP_038463786.1 metallophosphoesterase -
  ABK447_RS13530 (ABK447_13520) - 2735002..2735496 (+) 495 WP_088462390.1 L,D-transpeptidase family protein -
  ABK447_RS13535 (ABK447_13525) - 2735572..2736864 (+) 1293 WP_015239757.1 MFS transporter -
  ABK447_RS13540 (ABK447_13530) kre 2736987..2737451 (+) 465 WP_003154622.1 YkyB family protein Regulator
  ABK447_RS13545 (ABK447_13535) cheV 2737494..2738405 (-) 912 WP_007409609.1 chemotaxis protein CheV -
  ABK447_RS13550 (ABK447_13540) - 2738594..2738755 (+) 162 WP_007409608.1 hypothetical protein -
  ABK447_RS13555 (ABK447_13545) - 2738956..2740169 (+) 1214 Protein_2676 aminotransferase A -
  ABK447_RS13560 (ABK447_13550) - 2740150..2741970 (-) 1821 WP_023356869.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=1009197 ABK447_RS13540 WP_003154622.1 2736987..2737451(+) (kre) [Bacillus sp. hwrm1]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1009197 ABK447_RS13540 WP_003154622.1 2736987..2737451(+) (kre) [Bacillus sp. hwrm1]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment