Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ABK447_RS11925 Genome accession   NZ_CP157943
Coordinates   2310215..2310649 (-) Length   144 a.a.
NCBI ID   WP_015417516.1    Uniprot ID   -
Organism   Bacillus sp. hwrm1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2305215..2315649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABK447_RS11890 (ABK447_11880) - 2305230..2305583 (+) 354 WP_007410379.1 multidrug efflux SMR transporter -
  ABK447_RS11895 (ABK447_11885) - 2305597..2306049 (-) 453 WP_014305039.1 OsmC family protein -
  ABK447_RS11900 (ABK447_11890) - 2306108..2306815 (-) 708 WP_007410381.1 poly-gamma-glutamate hydrolase family protein -
  ABK447_RS11905 (ABK447_11895) - 2307071..2307304 (-) 234 WP_015239897.1 hypothetical protein -
  ABK447_RS11910 (ABK447_11900) - 2307483..2308811 (+) 1329 WP_007410382.1 S8 family peptidase -
  ABK447_RS11915 (ABK447_11905) - 2309004..2309366 (+) 363 WP_007410383.1 hypothetical protein -
  ABK447_RS11920 (ABK447_11910) - 2309400..2310155 (-) 756 WP_003154084.1 YoaK family protein -
  ABK447_RS11925 (ABK447_11915) nucA/comI 2310215..2310649 (-) 435 WP_015417516.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ABK447_RS11930 (ABK447_11920) - 2310938..2312149 (+) 1212 WP_094031922.1 cytochrome P450 -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15514.44 Da        Isoelectric Point: 7.2418

>NTDB_id=1009190 ABK447_RS11925 WP_015417516.1 2310215..2310649(-) (nucA/comI) [Bacillus sp. hwrm1]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADVRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=1009190 ABK447_RS11925 WP_015417516.1 2310215..2310649(-) (nucA/comI) [Bacillus sp. hwrm1]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGTATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCAGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATGTCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.258

86.111

0.493

Multiple sequence alignment