Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ABK447_RS07380 Genome accession   NZ_CP157943
Coordinates   1422959..1423726 (+) Length   255 a.a.
NCBI ID   WP_015240232.1    Uniprot ID   -
Organism   Bacillus sp. hwrm1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1417959..1428726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABK447_RS07350 (ABK447_07340) - 1418243..1420375 (+) 2133 WP_094031843.1 HD family phosphohydrolase -
  ABK447_RS07355 (ABK447_07345) ybeY 1420376..1420849 (+) 474 WP_012118016.1 rRNA maturation RNase YbeY -
  ABK447_RS07360 (ABK447_07350) - 1420830..1421204 (+) 375 WP_015240233.1 diacylglycerol kinase family protein -
  ABK447_RS07365 (ABK447_07355) - 1421328..1421738 (+) 411 WP_003152976.1 cytidine deaminase -
  ABK447_RS07370 (ABK447_07360) era 1421719..1422624 (+) 906 WP_094031842.1 GTPase Era -
  ABK447_RS07375 (ABK447_07365) - 1422779..1422922 (+) 144 WP_007408286.1 YqzL family protein -
  ABK447_RS07380 (ABK447_07370) recO 1422959..1423726 (+) 768 WP_015240232.1 DNA repair protein RecO Machinery gene
  ABK447_RS07385 (ABK447_07375) glyQ 1424028..1424915 (+) 888 WP_094031841.1 glycine--tRNA ligase subunit alpha -
  ABK447_RS07390 (ABK447_07380) glyS 1424908..1426947 (+) 2040 WP_059368104.1 glycine--tRNA ligase subunit beta -
  ABK447_RS07395 (ABK447_07385) ccpN 1427048..1427686 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  ABK447_RS07400 (ABK447_07390) - 1427712..1428524 (+) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29294.89 Da        Isoelectric Point: 8.7092

>NTDB_id=1009179 ABK447_RS07380 WP_015240232.1 1422959..1423726(+) (recO) [Bacillus sp. hwrm1]
MLTKSEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPMSPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1009179 ABK447_RS07380 WP_015240232.1 1422959..1423726(+) (recO) [Bacillus sp. hwrm1]
ATGCTGACTAAAAGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATGTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

88.235

100

0.882

Multiple sequence alignment