Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ABK447_RS06560 Genome accession   NZ_CP157943
Coordinates   1271469..1272221 (+) Length   250 a.a.
NCBI ID   WP_033574185.1    Uniprot ID   -
Organism   Bacillus sp. hwrm1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1266469..1277221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABK447_RS06545 (ABK447_06535) - 1266692..1266883 (-) 192 WP_003152639.1 hypothetical protein -
  ABK447_RS06550 (ABK447_06540) - 1267336..1269978 (+) 2643 WP_020956152.1 valine--tRNA ligase -
  ABK447_RS06555 (ABK447_06545) - 1270037..1271329 (+) 1293 WP_033574186.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ABK447_RS06560 (ABK447_06550) comC 1271469..1272221 (+) 753 WP_033574185.1 A24 family peptidase Machinery gene
  ABK447_RS06565 (ABK447_06555) - 1272348..1273349 (+) 1002 WP_012118106.1 SPOR domain-containing protein -
  ABK447_RS06570 (ABK447_06560) - 1273490..1274059 (+) 570 WP_007408164.1 nucleoside triphosphate pyrophosphatase -
  ABK447_RS06575 (ABK447_06565) radC 1274091..1274786 (+) 696 WP_007408165.1 DNA repair protein RadC -
  ABK447_RS06580 (ABK447_06570) mreB 1274878..1275891 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  ABK447_RS06585 (ABK447_06575) mreC 1275922..1276785 (+) 864 WP_007408166.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27253.96 Da        Isoelectric Point: 9.4293

>NTDB_id=1009172 ABK447_RS06560 WP_033574185.1 1271469..1272221(+) (comC) [Bacillus sp. hwrm1]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGFHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=1009172 ABK447_RS06560 WP_033574185.1 1271469..1272221(+) (comC) [Bacillus sp. hwrm1]
GTGCTTTTGATTCTGTTTTTTCTAGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCAGGCTTTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GGCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTAAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGAGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58

Multiple sequence alignment