Detailed information    

insolico Bioinformatically predicted

Overview


Name   degQ   Type   Regulator
Locus tag   ABK447_RS04690 Genome accession   NZ_CP157943
Coordinates   915780..915920 (+) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus sp. hwrm1     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context


Location: 910780..920920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABK447_RS04665 (ABK447_04660) - 911086..911484 (+) 399 WP_015240486.1 YueI family protein -
  ABK447_RS04670 (ABK447_04665) - 911581..912132 (+) 552 WP_003152033.1 cysteine hydrolase family protein -
  ABK447_RS04675 (ABK447_04670) - 912150..913616 (+) 1467 WP_015418109.1 nicotinate phosphoribosyltransferase -
  ABK447_RS04680 (ABK447_04675) - 913746..914969 (+) 1224 WP_007408678.1 EAL and HDOD domain-containing protein -
  ABK447_RS04685 (ABK447_04680) - 914976..915317 (-) 342 WP_007408677.1 hypothetical protein -
  ABK447_RS04690 (ABK447_04685) degQ 915780..915920 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  ABK447_RS04695 (ABK447_04690) - 916128..916988 (+) 861 WP_157774448.1 polyprenyl synthetase family protein -
  ABK447_RS04700 (ABK447_04695) comX 916957..917130 (+) 174 WP_012118314.1 competence pheromone ComX -
  ABK447_RS04705 (ABK447_04700) comP 917144..919444 (+) 2301 WP_124935036.1 histidine kinase Regulator
  ABK447_RS04710 (ABK447_04705) comA 919525..920169 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  ABK447_RS04715 (ABK447_04710) - 920191..920574 (+) 384 WP_012118312.1 hotdog fold thioesterase -

Sequence


Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=1009165 ABK447_RS04690 WP_003152043.1 915780..915920(+) (degQ) [Bacillus sp. hwrm1]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=1009165 ABK447_RS04690 WP_003152043.1 915780..915920(+) (degQ) [Bacillus sp. hwrm1]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains


Predicted by InterproScan.

(1-46)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891


Multiple sequence alignment