Detailed information NTG1009152

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: H0507_RS06745
• Genome accession: NZ_LR822010
• Coordinates: 1286823..1287749 (-)
• Length: 308 a.a.
• NCBI ID: WP_002946409.1
• Uniprot ID: Q5M3H5
• Organism: Streptococcus thermophilus isolate STH_CIRM_29
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1281823..1292749

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0507_RS06715 (STHERMO_1474)	-	1281902..1282696 (-)	795	WP_059257398.1	HAD hydrolase family protein	-
H0507_RS06720 (STHERMO_1475)	-	1282879..1283256 (+)	378	WP_011226300.1	GntR family transcriptional regulator	-
H0507_RS06725 (STHERMO_1476)	-	1283261..1283959 (+)	699	WP_011226301.1	ABC transporter ATP-binding protein	-
H0507_RS06730 (STHERMO_1477)	-	1283971..1284756 (+)	786	WP_002951425.1	hypothetical protein	-
H0507_RS06735 (STHERMO_1478)	-	1284806..1285735 (-)	930	WP_002951426.1	ATP-binding cassette domain-containing protein	-
H0507_RS06740 (STHERMO_1479)	amiE	1285728..1286813 (-)	1086	WP_011226304.1	ABC transporter ATP-binding protein	Regulator
H0507_RS06745 (STHERMO_1480)	amiD	1286823..1287749 (-)	927	WP_002946409.1	oligopeptide ABC transporter permease OppC	Regulator
H0507_RS06750 (STHERMO_1481)	amiC	1287749..1289242 (-)	1494	WP_011227407.1	ABC transporter permease	Regulator
H0507_RS06755 (STHERMO_1482)	amiA	1289304..1291271 (-)	1968	WP_011226784.1	peptide ABC transporter substrate-binding protein	Regulator

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34694.85 Da
• Isoelectric Point: 9.7054

>NTDB_id=1009152 H0507_RS06745 WP_002946409.1 1286823..1287749(-) (amiD) [Streptococcus thermophilus isolate STH_CIRM_29]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide

• Length: 927 bp

>NTDB_id=1009152 H0507_RS06745 WP_002946409.1 1286823..1287749(-) (amiD) [Streptococcus thermophilus isolate STH_CIRM_29]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterProScan.

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-71)

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (125-306)

3D structure

• AlphaFold DB: Q5M3H5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	100	100	1
amiD	Streptococcus thermophilus LMD-9	100	100	1
amiD	Streptococcus salivarius strain HSISS4	96.429	100	0.964