Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QUE41_RS19455 Genome accession   NZ_AP027368
Coordinates   4203987..4205438 (+) Length   483 a.a.
NCBI ID   WP_286340611.1    Uniprot ID   -
Organism   Ferrimonas sp. YFM     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4198987..4210438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE41_RS19425 (F0521_37500) - 4199603..4200565 (+) 963 WP_286340607.1 calcium/sodium antiporter -
  QUE41_RS19430 (F0521_37510) - 4200583..4201557 (+) 975 WP_286340608.1 KpsF/GutQ family sugar-phosphate isomerase -
  QUE41_RS19435 (F0521_37520) kdsC 4201563..4202111 (+) 549 WP_286342982.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  QUE41_RS19440 (F0521_37530) lptC 4202108..4202662 (+) 555 WP_286340609.1 LPS export ABC transporter periplasmic protein LptC -
  QUE41_RS19445 (F0521_37540) lptA 4202649..4203191 (+) 543 WP_286340610.1 lipopolysaccharide transport periplasmic protein LptA -
  QUE41_RS19450 (F0521_37550) lptB 4203188..4203919 (+) 732 WP_028107776.1 LPS export ABC transporter ATP-binding protein -
  QUE41_RS19455 (F0521_37560) rpoN/rpoN1 4203987..4205438 (+) 1452 WP_286340611.1 RNA polymerase factor sigma-54 Machinery gene
  QUE41_RS19460 (F0521_37570) hpf 4205462..4205749 (+) 288 WP_028107778.1 ribosome hibernation promoting factor -
  QUE41_RS19465 (F0521_37580) ptsN 4205752..4206198 (+) 447 WP_286340612.1 PTS IIA-like nitrogen regulatory protein PtsN -
  QUE41_RS19470 (F0521_37590) rapZ 4206195..4207061 (+) 867 WP_286340613.1 RNase adapter RapZ -
  QUE41_RS19475 (F0521_37600) - 4207039..4207311 (+) 273 WP_286340614.1 HPr family phosphocarrier protein -
  QUE41_RS19480 (F0521_37610) pmbA 4207363..4208703 (-) 1341 WP_286340615.1 metalloprotease PmbA -
  QUE41_RS19485 (F0521_37620) yjgA 4208824..4209348 (+) 525 WP_286340616.1 ribosome biogenesis factor YjgA -
  QUE41_RS19490 (F0521_37630) - 4209396..4210250 (-) 855 WP_286340617.1 hypothetical protein -

Sequence

Protein


Download         Length: 483 a.a.        Molecular weight: 54176.24 Da        Isoelectric Point: 4.4038

>NTDB_id=100911 QUE41_RS19455 WP_286340611.1 4203987..4205438(+) (rpoN/rpoN1) [Ferrimonas sp. YFM]
MKTSLQLKLGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALDANPLLEVEEDLSPAVPDTPDTATRDELEPAPEAASLDT
SEALSQTDMPDDLQVDTSWDEYYTSSPAPMSSREDDMPFQGSTGDSLQSHLLWQMELTPMSDTDRAIAVAIIDATDERGY
LTQTAEDILEAMGDDEVELDEVEAVLKRVQRFDPVGVCARDLAECLLVQLSQFDGGTPWLAEARMLIQEHMDLLANRDFR
GLMRKTRLKEEELKEAMELIQTLNPRPGSALVSDNDQYVIPDVAVSKRKGRWVVELNPDTMPKIRINEQYAALSRNSRNQ
ADSQFVRGHLQEAKWFLKSLESRNDTLLKVANCIVQFQQGFLEYGDEAMKPMVLNDVAEAVDMHESTISRVTTQKYMHTP
RGIFELKYFFSSHVSTDSGGECSSTAIRALIKKLVAAENPKKPLSDSKMAELLAEQGIKVARRTIAKYREALGIAPSNQR
KQL

Nucleotide


Download         Length: 1452 bp        

>NTDB_id=100911 QUE41_RS19455 WP_286340611.1 4203987..4205438(+) (rpoN/rpoN1) [Ferrimonas sp. YFM]
ATGAAGACTTCTCTACAGCTAAAGCTGGGACAGCAGCTCACCATGACCCCGCAGTTGCAACAGGCCATTCGCCTGCTGCA
ACTGTCGACGCTGGATCTCCAACAGGAGATTCAGGAGGCTCTGGATGCCAACCCCCTGCTTGAGGTCGAGGAGGATCTCA
GCCCAGCCGTCCCCGACACCCCGGACACCGCCACCCGGGATGAGTTGGAGCCCGCTCCGGAAGCCGCCAGCCTGGACACC
AGCGAGGCCCTGAGTCAGACCGACATGCCCGATGACCTTCAGGTCGACACCTCCTGGGACGAATACTACACCTCCTCCCC
GGCCCCCATGTCCAGCCGGGAAGACGACATGCCCTTTCAGGGCAGCACCGGCGACAGCCTTCAAAGCCATCTGCTGTGGC
AGATGGAACTGACCCCCATGTCCGATACCGACCGCGCCATCGCGGTGGCCATCATTGATGCCACCGACGAACGCGGCTAC
CTGACCCAGACCGCCGAAGACATTCTCGAAGCCATGGGCGACGATGAGGTGGAGCTGGACGAGGTGGAAGCGGTGCTCAA
GCGGGTGCAACGATTCGATCCTGTGGGCGTCTGTGCCCGGGATCTGGCCGAGTGCCTGCTGGTGCAACTGAGTCAGTTTG
ATGGGGGAACCCCCTGGCTGGCAGAGGCCAGGATGCTGATCCAGGAGCACATGGATCTGCTGGCCAATCGCGACTTCCGC
GGCCTGATGCGCAAGACCCGCCTCAAGGAGGAGGAGCTCAAAGAGGCGATGGAGCTGATCCAGACCCTCAACCCGCGTCC
CGGCAGCGCCCTGGTCAGCGATAACGACCAGTACGTGATTCCCGATGTGGCGGTCTCCAAGCGCAAGGGGCGCTGGGTAG
TGGAACTCAATCCGGACACCATGCCCAAGATCCGCATCAACGAACAGTATGCGGCCCTGAGCCGCAACAGCCGCAATCAG
GCAGACAGCCAATTCGTTCGCGGTCACCTGCAGGAAGCCAAGTGGTTCCTGAAGAGCCTGGAGAGCCGCAACGACACCCT
GCTCAAGGTGGCCAACTGCATCGTCCAGTTCCAGCAAGGCTTCCTGGAGTATGGTGACGAGGCGATGAAGCCCATGGTGC
TCAACGATGTGGCGGAAGCGGTGGACATGCACGAGTCCACTATCTCCCGGGTGACCACCCAGAAATACATGCATACGCCC
CGTGGCATCTTCGAGCTGAAATACTTCTTTTCCAGCCACGTCAGCACCGACAGTGGCGGCGAGTGCTCATCCACGGCAAT
TCGTGCTTTAATTAAAAAATTGGTTGCTGCTGAGAATCCTAAAAAACCTCTCAGTGACAGCAAAATGGCGGAGCTGCTGG
CAGAACAGGGAATCAAGGTGGCGAGACGGACCATCGCCAAGTACAGGGAAGCCCTGGGCATAGCTCCATCCAATCAGCGG
AAACAGCTGTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-49)

Sigma-54, DNA binding domain (Sigma54_DBD)

(324-482)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(123-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.941

100

0.48

Multiple sequence alignment