Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ABKA15_RS02075 Genome accession   NZ_CP157941
Coordinates   424550..426310 (+) Length   586 a.a.
NCBI ID   WP_106388169.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_010     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 419550..431310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKA15_RS02055 (ABKA15_02050) scrK 420810..421709 (+) 900 WP_186832676.1 fructokinase ScrK -
  ABKA15_RS02060 (ABKA15_02055) - 421777..422187 (+) 411 WP_003026163.1 peptide deformylase -
  ABKA15_RS02065 (ABKA15_02060) - 422343..422801 (+) 459 WP_003039423.1 MarR family winged helix-turn-helix transcriptional regulator -
  ABKA15_RS02070 (ABKA15_02065) rcrP 422794..424560 (+) 1767 WP_049514148.1 ABC transporter ATP-binding protein Regulator
  ABKA15_RS02075 (ABKA15_02070) rcrQ 424550..426310 (+) 1761 WP_106388169.1 ABC transporter ATP-binding protein Regulator
  ABKA15_RS02080 (ABKA15_02075) - 426522..426836 (+) 315 WP_022525145.1 PTS cellobiose transporter subunit IIB -
  ABKA15_RS02085 (ABKA15_02080) - 426847..427167 (+) 321 WP_021002019.1 PTS cellobiose transporter subunit IIA -
  ABKA15_RS02090 (ABKA15_02085) - 427294..428691 (-) 1398 WP_049514144.1 glycoside hydrolase family 1 protein -
  ABKA15_RS02095 (ABKA15_02090) celB 428835..430103 (+) 1269 WP_003039647.1 PTS cellobiose transporter subunit IIC -
  ABKA15_RS02100 (ABKA15_02095) - 430137..430862 (+) 726 WP_049514142.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64917.91 Da        Isoelectric Point: 6.0271

>NTDB_id=1009103 ABKA15_RS02075 WP_106388169.1 424550..426310(+) (rcrQ) [Streptococcus sp. KHUD_010]
MENKKSSLFSQVKPYLKGFQLPLLIAFVGAALSSIITVYGPDKLKEITNLITEGMRSQIDLKAISNIALFLAILYAVGAL
LNYTQSFIISSVIQHFSKRLRTAIAEKINKLPLRYFDSHSQGDTLSRVTNDVDTVGQSLNQSLGTVISSSLLLVAVLFMM
FYNNVVLSFVTIGSVLIGFVFVALIMGKSQRFFRAQQENLASVNGYVEEMYSGHNVIVSYNAADESKAAFQTLNTNLYNS
MWKSQFISGIMMPLMMFVGNFGYVMVVLVGASMALNGDVTMGTIVAFMVYVRTFSQPLSQIAQGITTLQQASAAMGRVFE
FLAEPEMENDEHKAQQLTTLKGDVAFDKVFFGYNPDRTIIHDFSANAKAGQKIAIVGPTGAGKTTIVNLLMKFYEIEKGR
ITIDGIDTKQMKRSEVHDAFSMVLQDTWLFEGTIKENLIYNQKNISDEAVVAAAKAVGVHHFIKTLPKGYDTVLDDTVSL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGN
HEQLMEQNGFYADLYNSQFDEDAEYA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=1009103 ABKA15_RS02075 WP_106388169.1 424550..426310(+) (rcrQ) [Streptococcus sp. KHUD_010]
ATGGAAAATAAAAAATCGTCTTTATTTAGCCAAGTGAAACCTTATCTCAAAGGTTTTCAGCTTCCATTGCTCATTGCATT
TGTGGGAGCGGCACTATCTAGTATTATTACAGTTTATGGACCGGACAAATTAAAAGAAATTACCAATCTCATCACAGAAG
GCATGCGAAGTCAGATTGATTTGAAAGCAATCTCCAACATTGCTCTTTTCTTAGCAATTTTATATGCAGTAGGGGCTTTA
TTAAATTATACTCAATCCTTTATCATCTCTTCAGTGATTCAGCATTTCTCCAAGCGTTTGCGGACTGCTATTGCTGAAAA
AATCAATAAATTGCCTCTGCGCTATTTTGACAGCCATTCCCAAGGGGACACTCTTTCACGGGTCACCAATGACGTGGATA
CTGTTGGACAATCTCTGAACCAAAGTTTAGGAACGGTGATTTCATCAAGTTTGCTTCTCGTTGCGGTTCTCTTTATGATG
TTTTACAATAATGTCGTTCTCTCCTTTGTAACGATTGGATCAGTCTTGATTGGCTTTGTCTTTGTTGCTTTGATTATGGG
AAAATCTCAACGATTCTTCCGAGCACAACAAGAAAATCTTGCCAGCGTCAATGGCTATGTGGAAGAAATGTACTCTGGGC
ATAATGTCATTGTCAGCTACAATGCCGCAGACGAATCCAAAGCAGCCTTTCAAACGCTCAATACGAATCTTTACAACAGC
ATGTGGAAATCCCAATTTATTTCAGGGATTATGATGCCGCTTATGATGTTTGTAGGGAACTTCGGTTACGTTATGGTTGT
TTTGGTTGGAGCGAGCATGGCCTTGAATGGCGATGTCACTATGGGAACGATTGTTGCCTTTATGGTGTATGTACGGACTT
TCTCTCAACCGTTGTCACAAATTGCGCAAGGGATTACCACTCTTCAACAAGCTAGCGCTGCTATGGGACGCGTGTTTGAA
TTTTTAGCAGAGCCTGAAATGGAAAACGATGAGCACAAGGCGCAACAACTCACGACCTTAAAAGGAGATGTTGCCTTTGA
TAAGGTATTCTTTGGTTACAATCCAGATCGAACGATTATTCATGATTTTTCTGCCAATGCAAAAGCAGGGCAAAAAATTG
CCATTGTCGGCCCGACCGGTGCTGGGAAGACGACGATTGTCAATTTGCTGATGAAATTCTATGAGATTGAGAAAGGGCGG
ATTACGATTGATGGTATTGATACGAAGCAAATGAAACGCTCCGAGGTACATGATGCCTTCTCCATGGTTCTTCAAGACAC
TTGGTTATTTGAGGGAACGATTAAGGAAAATTTGATTTACAATCAGAAAAATATTTCTGACGAAGCAGTTGTGGCAGCTG
CCAAAGCTGTTGGGGTTCATCACTTCATTAAGACTTTGCCAAAAGGATATGATACGGTGCTGGACGATACTGTGAGCCTC
TCTGTTGGGCAAAAGCAATTGCTAACCATTGCGCGTGCCCTTCTTAAGGATGCTCCATTGCTTATCTTGGACGAAGCGAC
TTCATCTGTTGATACACGGACGGAAGAGCTGATTCAAAAAGCGATGGATAAACTAATGGAAGGACGGACTTCCTTTGTCA
TTGCTCACCGTTTGTCAACGATTCGTAATGCTGACTTAATTTTGGTTATGCGAGATGGCAATATCATTGAACAAGGCAAT
CATGAACAATTGATGGAACAAAACGGCTTCTATGCTGATCTTTACAATAGTCAATTTGATGAAGACGCAGAATATGCGTA
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(23-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

71.478

99.317

0.71

Multiple sequence alignment