Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   ABHM94_RS03555 Genome accession   NZ_CP157939
Coordinates   639169..639606 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain P8     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 634169..644606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHM94_RS03535 (ABHM94_03535) kdpD 634657..636588 (+) 1932 WP_002893651.1 sensor histidine kinase KdpD -
  ABHM94_RS03540 (ABHM94_03540) uvrB 636583..638556 (-) 1974 WP_002856888.1 excinuclease ABC subunit UvrB -
  ABHM94_RS03545 (ABHM94_03545) - 638710..638940 (+) 231 WP_002852327.1 hypothetical protein -
  ABHM94_RS03550 (ABHM94_03550) - 638930..639172 (+) 243 WP_002854947.1 hypothetical protein -
  ABHM94_RS03555 (ABHM94_03555) Cj0683 639169..639606 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ABHM94_RS03560 (ABHM94_03560) priA 639588..641441 (+) 1854 WP_002920056.1 primosomal protein N' -
  ABHM94_RS03565 (ABHM94_03565) cipA 641451..642845 (-) 1395 WP_002916267.1 DUF2972 domain-containing protein -
  ABHM94_RS03570 (ABHM94_03570) ispG 642991..644064 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=1009039 ABHM94_RS03555 WP_002852324.1 639169..639606(+) (Cj0683) [Campylobacter jejuni strain P8]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1009039 ABHM94_RS03555 WP_002852324.1 639169..639606(+) (Cj0683) [Campylobacter jejuni strain P8]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment