Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ABNF96_RS13690 Genome accession   NZ_CP157937
Coordinates   2683884..2684837 (-) Length   317 a.a.
NCBI ID   WP_011247737.1    Uniprot ID   Q5WDY1
Organism   Shouchella clausii strain TIL-28S     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2678884..2689837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNF96_RS13660 - 2678949..2679572 (+) 624 WP_011247731.1 deoxynucleoside kinase -
  ABNF96_RS13665 - 2679584..2680213 (+) 630 WP_011247732.1 deoxynucleoside kinase -
  ABNF96_RS13670 - 2680252..2680860 (-) 609 WP_011247733.1 restriction endonuclease -
  ABNF96_RS13675 - 2681035..2682006 (-) 972 WP_011247734.1 siderophore ABC transporter substrate-binding protein -
  ABNF96_RS13680 - 2682123..2682944 (-) 822 WP_208610215.1 ATP-binding cassette domain-containing protein -
  ABNF96_RS13685 - 2682941..2683894 (-) 954 WP_051881152.1 iron chelate uptake ABC transporter family permease subunit -
  ABNF96_RS13690 ceuB 2683884..2684837 (-) 954 WP_011247737.1 ABC transporter permease Machinery gene
  ABNF96_RS13695 - 2684987..2685613 (-) 627 WP_035202684.1 phosphatase PAP2 family protein -
  ABNF96_RS13700 - 2685856..2687253 (+) 1398 WP_035202683.1 L-cystine transporter -
  ABNF96_RS13705 - 2687372..2687845 (-) 474 WP_011247740.1 small multi-drug export protein -
  ABNF96_RS13710 - 2687934..2688392 (+) 459 WP_011247741.1 DinB family protein -
  ABNF96_RS13715 - 2688421..2688801 (-) 381 WP_011247742.1 YisL family protein -
  ABNF96_RS13720 - 2688876..2689373 (-) 498 WP_035202680.1 cytochrome c biogenesis protein CcdC -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35003.22 Da        Isoelectric Point: 10.1201

>NTDB_id=1009017 ABNF96_RS13690 WP_011247737.1 2683884..2684837(-) (ceuB) [Shouchella clausii strain TIL-28S]
MKIKYLLPLLLILSFASLFIGVQDISPLDLFRLDDEDVQTLVISRIPRLLSVLIVGVSLSVCGLIMQQLTQNKFVSPTTA
GTMDWARLGILVAVVVFTQATTLQRMFIAFLFALFGTFLFMKILERIRFKNVVFVPLVGLMLGSVVNSITTFLAYRYDLV
QSLSSWMQGSFSLVLKGRYEILYIGIPLVVIAFLFANRFTVAGMGKDFSTNLGLNYNQIMNIGLFIVAMITATIVVTIGS
IPFLGLVIPNIVSIIRGDNLKNSLPHTALLGAIFLLACDILGRVLIYPYEIPIGLVVGVVGSAIFLYLLLRRRSHAA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1009017 ABNF96_RS13690 WP_011247737.1 2683884..2684837(-) (ceuB) [Shouchella clausii strain TIL-28S]
ATGAAAATAAAATATTTACTCCCTTTGCTTTTAATTTTATCGTTTGCATCTTTATTTATTGGCGTACAGGATATATCGCC
ACTTGACTTATTTCGTTTAGACGATGAAGATGTGCAAACACTTGTCATTAGCCGTATCCCCCGTCTATTGAGTGTATTGA
TTGTTGGTGTTAGTTTAAGCGTTTGCGGTTTAATTATGCAGCAGCTTACACAAAACAAATTTGTTTCGCCGACAACAGCT
GGAACTATGGATTGGGCTCGGCTTGGCATTCTTGTCGCCGTGGTTGTTTTTACACAAGCGACCACGTTGCAAAGGATGTT
TATTGCCTTTCTTTTTGCGTTGTTTGGAACGTTTCTTTTTATGAAAATACTGGAGCGCATCCGCTTTAAAAACGTTGTGT
TTGTCCCGCTTGTCGGGCTTATGTTAGGCAGTGTGGTCAACTCAATCACGACTTTTCTAGCTTACCGGTATGATTTAGTG
CAAAGCTTATCTTCTTGGATGCAAGGGAGCTTTTCACTCGTTCTTAAAGGGCGCTATGAAATTTTATACATAGGCATTCC
CCTTGTTGTCATTGCCTTTTTATTCGCAAATCGCTTTACGGTAGCAGGAATGGGGAAGGATTTTTCGACAAACTTGGGCT
TAAATTATAACCAAATTATGAATATCGGCCTTTTCATTGTCGCGATGATCACGGCTACGATTGTCGTCACAATTGGCTCA
ATTCCTTTTTTAGGGCTAGTCATTCCTAACATCGTTTCGATTATAAGAGGGGACAACTTAAAAAACAGTTTGCCTCATAC
AGCGCTATTAGGCGCCATTTTCTTGCTCGCTTGTGATATTTTAGGGCGTGTTCTCATTTATCCATATGAAATTCCGATTG
GACTGGTCGTTGGGGTTGTCGGGAGCGCGATCTTTTTGTACTTGCTCTTAAGGAGACGATCTCATGCAGCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5WDY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.367

99.685

0.492

Multiple sequence alignment