Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   H0501_RS08825 Genome accession   NZ_LR822008
Coordinates   1715705..1715998 (-) Length   97 a.a.
NCBI ID   WP_082309154.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_18     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1710705..1720998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0501_RS08790 (STHERMO_1963) - 1711107..1711550 (-) 444 WP_084829882.1 CAAX protease -
  H0501_RS10180 (STHERMO_1964) - 1711624..1711962 (-) 339 WP_232086462.1 CPBP family intramembrane glutamic endopeptidase -
  H0501_RS10185 (STHERMO_1965) - 1712006..1712281 (-) 276 WP_232086463.1 CAAX protease -
  H0501_RS08800 (STHERMO_1966) - 1712293..1712490 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  H0501_RS08805 (STHERMO_1967) - 1712739..1713932 (-) 1194 WP_179970807.1 acetate kinase -
  H0501_RS08810 (STHERMO_1968) comGH 1713988..1714944 (-) 957 WP_084831205.1 class I SAM-dependent methyltransferase Machinery gene
  H0501_RS08815 (STHERMO_1969) comGG 1714989..1715306 (-) 318 WP_082309152.1 competence type IV pilus minor pilin ComGG Machinery gene
  H0501_RS08820 (STHERMO_1970) comGF 1715284..1715721 (-) 438 WP_082309153.1 competence type IV pilus minor pilin ComGF Machinery gene
  H0501_RS08825 (STHERMO_1971) comGE 1715705..1715998 (-) 294 WP_082309154.1 competence type IV pilus minor pilin ComGE Machinery gene
  H0501_RS08830 (STHERMO_1972) comGD 1715970..1716398 (-) 429 WP_253269448.1 competence type IV pilus minor pilin ComGD Machinery gene
  H0501_RS08835 (STHERMO_1973) comGC 1716358..1716684 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  H0501_RS08840 (STHERMO_1974) comGB 1716681..1717781 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  H0501_RS08845 (STHERMO_1975) comGA/cglA/cilD 1717663..1718604 (-) 942 WP_014608745.1 competence type IV pilus ATPase ComGA Machinery gene
  H0501_RS08850 (STHERMO_1976) - 1718685..1719047 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10860.74 Da        Isoelectric Point: 10.4561

>NTDB_id=1008979 H0501_RS08825 WP_082309154.1 1715705..1715998(-) (comGE) [Streptococcus thermophilus isolate STH_CIRM_18]
MVNIKRRSLRGYILIESLVAMAVLVLVSSLILEQINTNRRLMSDNLHQQEVLSVATMAVQTKQDQLTLNGIAVTVKRSQQ
GITVYESGKEIIHVSKQ

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1008979 H0501_RS08825 WP_082309154.1 1715705..1715998(-) (comGE) [Streptococcus thermophilus isolate STH_CIRM_18]
GTGGTAAATATAAAAAGACGATCTCTTAGAGGTTATATTCTTATTGAAAGTCTGGTAGCTATGGCTGTTTTAGTACTTGT
CAGCAGTCTGATATTGGAACAAATTAATACCAACCGCAGACTAATGTCTGATAATCTCCATCAACAAGAGGTCTTGAGTG
TGGCAACAATGGCAGTTCAGACCAAGCAAGACCAGTTAACGCTGAATGGCATAGCGGTGACAGTTAAACGTAGCCAGCAA
GGTATCACGGTTTATGAATCGGGAAAGGAGATTATTCATGTATCTAAGCAGTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

42.268

100

0.423
  comGE Streptococcus mutans UA159

42.268

100

0.423