Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   N837_RS05960 Genome accession   NZ_CP006689
Coordinates   1127434..1127928 (+) Length   164 a.a.
NCBI ID   WP_002857890.1    Uniprot ID   Q9PN97
Organism   Campylobacter jejuni subsp. jejuni NCTC 11168-GSv strain NCTC 11168-rNRC     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1122434..1132928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N837_RS05945 (N920_05975) - 1123820..1124998 (-) 1179 WP_002864549.1 metal-dependent hydrolase -
  N837_RS05950 (N920_05980) gpsA 1125008..1125904 (-) 897 WP_002859277.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  N837_RS05955 (N920_05985) gatB 1125901..1127319 (-) 1419 WP_002858123.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  N837_RS05960 (N920_05990) luxS 1127434..1127928 (+) 495 WP_002857890.1 S-ribosylhomocysteine lyase Regulator
  N837_RS05965 (N920_05995) - 1128240..1129232 (+) 993 WP_002858100.1 isopenicillin N synthase family oxygenase -
  N837_RS05970 (N920_06000) - 1129243..1130013 (+) 771 WP_019108718.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  N837_RS05975 (N920_06005) metE 1130025..1132289 (+) 2265 WP_002864555.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18209.18 Da        Isoelectric Point: 6.6314

>NTDB_id=100888 N837_RS05960 WP_002857890.1 1127434..1127928(+) (luxS) [Campylobacter jejuni subsp. jejuni NCTC 11168-GSv strain NCTC 11168-rNRC]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSIAKAWEAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIINNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=100888 N837_RS05960 WP_002857890.1 1127434..1127928(+) (luxS) [Campylobacter jejuni subsp. jejuni NCTC 11168-GSv strain NCTC 11168-rNRC]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTATTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTCGCAGGATTTATGAGAGATCATCTTAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCTGATGAGAAAAGTATTGCAAAAGCTTGGGAAGCAGC
CATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTACCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAAGTTTTAAATCTAGGTATTAGCATAATAAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PN97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment