Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   STHERMO_RS06320 Genome accession   NZ_LR822006
Coordinates   1203279..1203959 (-) Length   226 a.a.
NCBI ID   WP_003094822.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_16     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1198279..1208959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STHERMO_RS06290 (STHERMO_1386) - 1198487..1198936 (-) 450 WP_011227350.1 cytidine deaminase family protein -
  STHERMO_RS06295 (STHERMO_1387) - 1198947..1199126 (-) 180 Protein_1178 ABC transporter permease -
  STHERMO_RS06300 (STHERMO_1388) - 1199128..1199325 (-) 198 Protein_1179 YkgJ family cysteine cluster protein -
  STHERMO_RS06305 (STHERMO_1389) - 1199410..1201410 (-) 2001 WP_179970504.1 ABC transporter permease -
  STHERMO_RS06310 (STHERMO_1390) - 1201412..1202170 (-) 759 WP_011227353.1 ABC transporter ATP-binding protein -
  STHERMO_RS06315 (STHERMO_1391) - 1202315..1203289 (-) 975 WP_101361257.1 sensor histidine kinase -
  STHERMO_RS06320 (STHERMO_1392) braR 1203279..1203959 (-) 681 WP_003094822.1 response regulator transcription factor Regulator
  STHERMO_RS06325 (STHERMO_1393) - 1204410..1204990 (+) 581 Protein_1184 xanthine phosphoribosyltransferase -
  STHERMO_RS06330 - 1204990..1206260 (+) 1271 Protein_1185 nucleobase:cation symporter-2 family protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26122.50 Da        Isoelectric Point: 5.0092

>NTDB_id=1008846 STHERMO_RS06320 WP_003094822.1 1203279..1203959(-) (braR) [Streptococcus thermophilus isolate STH_CIRM_16]
MHKILLVEDDEVIRQQVKKMLEQWGYEVVLVEDFMEVLSIFVKVEPHLVLMDIGLPLFNGYHWCQEIRKVSKVPIMFLSS
RDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQSLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQIL
QVLFERSGNIVSREDLMKELWNSDFFIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGYGLRHDG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=1008846 STHERMO_RS06320 WP_003094822.1 1203279..1203959(-) (braR) [Streptococcus thermophilus isolate STH_CIRM_16]
ATGCATAAGATTTTATTAGTTGAGGACGACGAGGTTATCCGTCAACAAGTCAAAAAAATGCTAGAACAGTGGGGTTACGA
AGTTGTTCTTGTTGAAGATTTCATGGAAGTATTATCTATTTTTGTAAAAGTAGAGCCCCACTTGGTTCTTATGGACATTG
GTTTACCTCTATTTAATGGTTATCATTGGTGTCAGGAAATTCGTAAGGTCTCCAAGGTGCCTATTATGTTCTTGTCTTCC
AGAGATCAGGCCATGGATATCGTTATGGCAATCAATATGGGTGGGGACGACTTTGTGACTAAACCCTTTGACCAAAATGT
TCTCTTGGCAAAAATTCAAGGGCTTTTGCGCCGATCTTATGAGTTTGGAAAGGATCAGAGTCTTTTGGAATATATGGGTG
TGATTCTGAACCTTAAGGCCATGGATCTGGTTTATCAGGGAGAAGTCGTTTCTTTGACTAAGAATGAATTTCAGATTTTA
CAAGTTCTCTTCGAGCGTTCTGGTAATATCGTTAGTCGTGAAGACCTCATGAAGGAGCTTTGGAATAGTGACTTCTTTAT
TGATGATAACACTCTCTCTGTAAATGTGGCACGTTTACGTAAGAAGTTAGAGGCAGTTGGTTTGAAGGACTTTATTGAAA
CCAAGAAAGGTGTCGGTTACGGGTTGCGTCATGATGGATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-221)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

52.294

96.46

0.504